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List of works by Ivan Čepička

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CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

scientific article
Critical taxonomic revision of Parabasalids with description of one new genus and three new species

scientific article
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

scientific article published on 01 January 2019
Cryptic species within the Tetratrichomonas gallinarum species complex revealed by molecular polymorphism

scientific article published on 16 December 2004
New evolutionary lineages, unexpected diversity, and host specificity in the parabasalid genus Tetratrichomonas

scientific article published on 10 February 2006
Retortamonad flagellates are closely related to diplomonads--implications for the history of mitochondrial function in eukaryote evolution

scientific article
Between a Pod and a Hard Test: The Deep Evolution of Amoebae.

scientific article published on 15 May 2017
Critical analysis of the topology and rooting of the parabasalian 16S rRNA tree

scientific article published in September 2004
SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis

scientific article
Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

scientific article
Evolution of Archamoebae: morphological and molecular evidence for pelobionts including Rhizomastix, Entamoeba, Iodamoeba, and Endolimax

scientific article
Affiliation of Cochlosoma to trichomonads confirmed by phylogenetic analysis of the small-subunit rRNA gene and a new family concept of the order Trichomonadida

scientific article
Biodiversity of avian trypanosomes

scientific article
Extensive diversity of intestinal trichomonads of non-human primates.

scientific article published on 26 September 2011
Multigene Phylogenies of Diverse Carpediemonas-like Organisms Identify the Closest Relatives of ‘Amitochondriate’ Diplomonads and Retortamonads

scientific article published on 23 February 2012
Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: implications for the evolutionary history of the double karyomastigont of diplomonads

scientific article
Morphological and molecular diversity of the monocercomonadid genera Monocercomonas, Hexamastix, and Honigbergiella gen. nov.

scientific article
Diversity, evolution and molecular systematics of the Psalteriomonadidae, the main lineage of anaerobic/microaerophilic heteroloboseans (excavata: discoba).

scientific article published on 21 December 2011
Sergeia podlipaevi gen. nov., sp. nov. (Trypanosomatidae, Kinetoplastida), a parasite of biting midges (Ceratopogonidae, Diptera).

scientific article
Creneis carolina gen. et sp. nov. (Heterolobosea), a Novel Marine Anaerobic Protist with Strikingly Derived Morphology and Life Cycle

scientific article published on June 5, 2014
Cryptic diversity of free-living parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. g., n. sp., as inferred from small subunit rDNA sequences.

scientific article
Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.).

scientific article
The phylogenetic position of enteromonads: a challenge for the present models of diplomonad evolution

scientific article
Phylogenetic position of Protoopalina intestinalis based on SSU rRNA gene sequence

scientific article
A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats.

scientific article
Dactylomonas gen. nov., a Novel Lineage of Heterolobosean Flagellates with Unique Ultrastructure, Closely Related to the Amoeba Selenaion koniopes Park, De Jonckheere & Simpson, 2012

scientific article published on 15 June 2018
Herpetomonas trimorpha sp. nov. (Trypanosomatidae, Kinetoplastida), a parasite of the biting midge Culicoides truncorum (Ceratopogonidae, Diptera).

scientific article
Morphological Identities of Two Different Marine Stramenopile Environmental Sequence Clades: Bicosoeca kenaiensis (Hilliard, 1971) and Cantina marsupialis (Larsen and Patterson, 1990) gen. nov., comb. nov.

scientific article
A complex of three new white-spored, sympatric, and host range limited Geosmithia species

scientific article
Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage

scientific article
Biting midges (Ceratopogonidae) as vectors of avian trypanosomes.

scientific article
Nuclear genetic codes with a different meaning of the UAG and the UAA codon

scientific article
Morphological and molecular evidence support a close relationship between the free-living archamoebae Mastigella and Pelomyxa.

scientific article
Evolution of the microtubular cytoskeleton (flagellar apparatus) in parasitic protists

scientific article
Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes

scientific article
Molecular identification of Entamoeba species in savanna woodland chimpanzees (Pan troglodytes schweinfurthii).

scientific article
InPouch™ TF-Feline medium is not specific for Tritrichomonas foetus.

scientific article published on 16 April 2013
Microbiology of diverse acidic and non-acidic microhabitats within a sulfidic ore mine.

scientific article
Survey on diversity of marine/saline anaerobic Heterolobosea (Excavata: Discoba) with description of seven new species

scientific article
Phylogenetic position of Karotomorpha and paraphyly of Proteromonadidae

scientific article
Non-monophyly of Retortamonadida and high genetic diversity of the genus Chilomastix suggested by analysis of SSU rDNA.

scientific article published on 3 May 2008
First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group

scientific article published on 27 January 2016
Fe-S Cluster Assembly in Oxymonads and Related Protists

scientific article published on 01 November 2018
Molecular and Morphological Diversity of the Oxymonad Genera Monocercomonoides and Blattamonas gen. nov

scientific article published on 30 June 2018
Was the Mitochondrion Necessary to Start Eukaryogenesis?

scientific article published on 19 November 2018
Morphological and Molecular Diversity of the Neglected Genus Rhizomastix Alexeieff, 1911 (Amoebozoa: Archamoebae) with Description of Five New Species.

scientific article
First report on trichomonads from true bugs

scholarly article published by Ivan Čepička in 2014
Redescription and molecular phylogeny of the type species for two main metopid genera, Metopus es (Müller, 1776) Lauterborn, 1916 and Brachonella contorta (Levander, 1894) Jankowski, 1964 (Metopida, Ciliophora), based on broad geographic sampling.

scientific article published on 19 December 2016
Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis

scientific article published on 18 April 2020
Molecular and morphological diversity of the genus Hypotrichomonas (Parabasalia: Hypotrichomonadida), with descriptions of six new species.

scientific article

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