List of works - Jens Carlsson

A genomic Neolithic time transect of hunter-farmer admixture in central Poland

scientific article published in Scientific Reports

A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding

scientific article

A previously undescribed ostreid herpes virus 1 (OsHV-1) genotype detected in the pacific oyster, Crassostrea gigas, in Ireland

scientific article published on 19 July 2012

A primer for the Environmental Impact Assessment of mining at seafloor massive sulfide deposits

article

A primer for use of genetic tools in selecting and testing the suitability of set-aside sites protected from deep-sea seafloor massive sulfide mining activities

scholarly article by Rachel E. Boschen published in March 2016

A quantitative PCR based environmental DNA assay for detecting Atlantic salmon ( Salmo salar L.)

scientific article published on 29 November 2017

A quantitative PCR‐based environmental DNA assay for detecting Atlantic salmon ( Salmo salar L.)

scientific article published on 17 July 2018

An eDNA assay for Irish Petromyzon marinus and Salmo trutta and field validation in running water

scientific article published on 17 September 2015

Assessment of the impact of a pathogen, Bonamia ostreae, on Ostrea edulis oyster stocks with different histories of exposure to the parasite in Ireland

Avoidance of headwinds or exploitation of ground effect-why do birds fly low?

article by James Finn et al published 25 May 2012 in Journal of Field Ornithology

Balancing selection on MHC class I in wild brown trout Salmo trutta

scientific article published on 01 September 2012

Bringing molecular tools into environmental resource management: untangling the molecules to policy pathway

scientific article

Characterization of 12 polymorphic microsatellite loci in Ifremeria nautilei, a chemoautotrophic gastropod from deep-sea hydrothermal vents

Characterization of 18 polymorphic microsatellite loci from Bathymodiolus manusensis (Bivalvia, Mytilidae) from deep-sea hydrothermal vents

Characterization of nine polymorphic microsatellite loci in Chorocaris sp. (Crustacea, Caridea, Alvinocarididae) from deep-sea hydrothermal vents

article published in 2010

Circadian clock gene (OtsClock1b)variation and time of ocean return in Atlantic salmonSalmo salar

article

Comparative population genetics of two invading ticks: Evidence of the ecological mechanisms underlying tick range expansions ⬇️

scientific article published on 5 August 2015

Comparative population structure of two deep-sea hydrothermal-vent-associated decapods (Chorocaris sp. 2 and Munidopsis lauensis) from southwestern Pacific back-arc basins

scientific article (publication date: 2014)

Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications

scientific article published in 2016

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

scientific article (publication date: 29 November 2016)

Development and Assessment of a Sensitive and Cost-Effective Polymerase Chain Reaction to Detect Ostreid Herpesvirus 1 and Variants

article

Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts

scientific article published in 2017

Ecosystem status of the deep Black Sea, soft sediment, benthic community

Effects of microsatellite null alleles on assignment testing

scientific article published on 4 June 2008

Eight PCR primers to amplify EST-linked microsatellites in the Eastern oyster,Crassostrea virginicagenome

scientific article published in 2006

Evaluating Recruitment Contribution of a Selectively Bred Aquaculture Line of the Oyster, Crassostrea virginica used in Restoration Efforts

Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)

Genetic evidence for the uncoupling of local aquaculture activities and a population of an invasive species--a case study of Pacific oysters (Crassostrea gigas).

scientific article

Genetic identity of YOY bluefin tuna from the eastern and western Atlantic spawning areas

scientific article

Genetic population structure of US atlantic coastal striped bass (Morone saxatilis).

scientific article published on 16 May 2013

Genetic structure and diversity of migratory freshwater fish in a fragmented Neotropical river system

Genetic structure of Eurasian badgers Meles meles (Carnivora: Mustelidae) and the colonization history of Ireland

Identifying spawning sites and other critical habitat in lotic systems using eDNA "snapshots": A case study using the sea lamprey L

scientific article published on 27 December 2018

Investigating a simplified method for noninvasive genetic sampling in East African mammals using silica dried scat swabs

scientific article published on 06 March 2020

Isolation and characterization of 13 polymorphic microsatellite loci in Hypostomus ancistroides (Teleostei, Loricariidae) and cross-amplification in related species

scientific article

Kin-biased distribution in brown trout: an effect of redd location or kin recognition?

scientific article published on February 2004

MHC-mediated spatial distribution in brown trout (Salmo trutta) fry.

scientific article published on 21 September 2011

Managing the small stream network for improved water quality, biodiversity and ecosystem services protection (SSNet)

scholarly article by Mary Kelly-Quinn et al published 29 January 2019 in Research Ideas and Outcomes

Micro-scale distribution of brown trout: an opportunity for kin selection?

article

Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea.

scientific article

Microsatellites reveal fine-scale genetic structure in stream-living brown trout

article

Migration of landlocked brown trout in two Scandinavian streams as revealed from trap data

scientific article published in 2004

Moytirra: Discovery of the first known deep-sea hydrothermal vent field on the slow-spreading Mid-Atlantic Ridge north of the Azores

scholarly article

Multiplexing with three-primer PCR for rapid and economical microsatellite validation

scientific article

Next Gen Pop Gen: implementing a high-throughput approach to population genetics in boarfish (Capros aper)

scientific article

Population structure of Bathymodiolus manusensis, a deep-sea hydrothermal vent-dependent mussel from Manus Basin, Papua New Guinea.

scientific article published on 21 August 2017

Rapid, economical single-nucleotide polymorphism and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod Gadus morhua

scientific article

Rise of the Cybercrabs: how digital cloning in an integrated taxonomic framework can support deep-sea exploration

Screening of repetitive motifs inside the genome of the flat oyster (Ostrea edulis): Transposable elements and short tandem repeats

scientific article published on September 2015

Siboglinidae Tubes as an Additional Niche for Microbial Communities in the Gulf of Cádiz-A Microscopical Appraisal

scientific article published on 05 March 2020

Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers

article

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data

scientific article published in 2021

The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

scientific article published on 30 January 2017

The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

article

The effect of family structure on the likelihood for kin-biased distribution: an empirical study of brown trout populations

article

The health status of mussels, Mytilus spp., in Ireland and Wales with the molecular identification of a previously undescribed haplosporidian

scientific article published on 6 March 2014

The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific

scientific article

VentBase: Developing a consensus among stakeholders in the deep-sea regarding environmental impact assessment for deep-sea mining–A workshop report

Wild and aquaculture populations of the eastern oyster compared using microsatellites

scientific article published on 27 October 2006

The bacterial hitchhiker’s guide to COI: Universal primer-based COI capture probes fail to exclude bacterial DNA, but 16S capture leaves metazoa behind

scientific article published in 2022

List of works by Jens Carlsson

A genomic Neolithic time transect of hunter-farmer admixture in central Poland

A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding

A previously undescribed ostreid herpes virus 1 (OsHV-1) genotype detected in the pacific oyster, Crassostrea gigas, in Ireland

A primer for the Environmental Impact Assessment of mining at seafloor massive sulfide deposits

A primer for use of genetic tools in selecting and testing the suitability of set-aside sites protected from deep-sea seafloor massive sulfide mining activities

A quantitative PCR based environmental DNA assay for detecting Atlantic salmon ( Salmo salar L.)

A quantitative PCR‐based environmental DNA assay for detecting Atlantic salmon ( Salmo salar L.)

An eDNA assay for Irish Petromyzon marinus and Salmo trutta and field validation in running water

Assessment of the impact of a pathogen, Bonamia ostreae, on Ostrea edulis oyster stocks with different histories of exposure to the parasite in Ireland

Avoidance of headwinds or exploitation of ground effect-why do birds fly low?

Balancing selection on MHC class I in wild brown trout Salmo trutta

Bringing molecular tools into environmental resource management: untangling the molecules to policy pathway

Characterization of 12 polymorphic microsatellite loci in Ifremeria nautilei, a chemoautotrophic gastropod from deep-sea hydrothermal vents

Characterization of 18 polymorphic microsatellite loci from Bathymodiolus manusensis (Bivalvia, Mytilidae) from deep-sea hydrothermal vents

Characterization of nine polymorphic microsatellite loci in Chorocaris sp. (Crustacea, Caridea, Alvinocarididae) from deep-sea hydrothermal vents

Circadian clock gene (OtsClock1b)variation and time of ocean return in Atlantic salmonSalmo salar

Comparative population genetics of two invading ticks: Evidence of the ecological mechanisms underlying tick range expansions ⬇️

Comparative population structure of two deep-sea hydrothermal-vent-associated decapods (Chorocaris sp. 2 and Munidopsis lauensis) from southwestern Pacific back-arc basins

Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

Development and Assessment of a Sensitive and Cost-Effective Polymerase Chain Reaction to Detect Ostreid Herpesvirus 1 and Variants

Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts

Ecosystem status of the deep Black Sea, soft sediment, benthic community

Effects of microsatellite null alleles on assignment testing

Eight PCR primers to amplify EST-linked microsatellites in the Eastern oyster,Crassostrea virginicagenome

Evaluating Recruitment Contribution of a Selectively Bred Aquaculture Line of the Oyster, Crassostrea virginica used in Restoration Efforts

Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)

Genetic evidence for the uncoupling of local aquaculture activities and a population of an invasive species--a case study of Pacific oysters (Crassostrea gigas).

Genetic identity of YOY bluefin tuna from the eastern and western Atlantic spawning areas

Genetic population structure of US atlantic coastal striped bass (Morone saxatilis).

Genetic structure and diversity of migratory freshwater fish in a fragmented Neotropical river system

Genetic structure of Eurasian badgers Meles meles (Carnivora: Mustelidae) and the colonization history of Ireland

Identifying spawning sites and other critical habitat in lotic systems using eDNA "snapshots": A case study using the sea lamprey L

Investigating a simplified method for noninvasive genetic sampling in East African mammals using silica dried scat swabs

Isolation and characterization of 13 polymorphic microsatellite loci in Hypostomus ancistroides (Teleostei, Loricariidae) and cross-amplification in related species

Kin-biased distribution in brown trout: an effect of redd location or kin recognition?

MHC-mediated spatial distribution in brown trout (Salmo trutta) fry.

Managing the small stream network for improved water quality, biodiversity and ecosystem services protection (SSNet)

Micro-scale distribution of brown trout: an opportunity for kin selection?

Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea.

Microsatellites reveal fine-scale genetic structure in stream-living brown trout

Migration of landlocked brown trout in two Scandinavian streams as revealed from trap data

Moytirra: Discovery of the first known deep-sea hydrothermal vent field on the slow-spreading Mid-Atlantic Ridge north of the Azores

Multiplexing with three-primer PCR for rapid and economical microsatellite validation

Next Gen Pop Gen: implementing a high-throughput approach to population genetics in boarfish (Capros aper)

Population structure of Bathymodiolus manusensis, a deep-sea hydrothermal vent-dependent mussel from Manus Basin, Papua New Guinea.

Rapid, economical single-nucleotide polymorphism and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod Gadus morhua

Rise of the Cybercrabs: how digital cloning in an integrated taxonomic framework can support deep-sea exploration

Screening of repetitive motifs inside the genome of the flat oyster (Ostrea edulis): Transposable elements and short tandem repeats

Siboglinidae Tubes as an Additional Niche for Microbial Communities in the Gulf of Cádiz-A Microscopical Appraisal

Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data

The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

The effect of family structure on the likelihood for kin-biased distribution: an empirical study of brown trout populations

The health status of mussels, Mytilus spp., in Ireland and Wales with the molecular identification of a previously undescribed haplosporidian

The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific

VentBase: Developing a consensus among stakeholders in the deep-sea regarding environmental impact assessment for deep-sea mining–A workshop report

Wild and aquaculture populations of the eastern oyster compared using microsatellites

﻿The bacterial hitchhiker’s guide to COI: Universal primer-based COI capture probes fail to exclude bacterial DNA, but 16S capture leaves metazoa behind

The bacterial hitchhiker’s guide to COI: Universal primer-based COI capture probes fail to exclude bacterial DNA, but 16S capture leaves metazoa behind