List of works - Tim Urich

A Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function

scientific article published on 28 November 2020

A plant–microbe interaction framework explaining nutrient effects on primary production

article

A proteomic approach toward the selection of proteins with enhanced intrinsic conformational stability.

scientific article published in October 2006

Adaptation of soil microbial community structure and function to chronic metal contamination at an abandoned Pb-Zn mine.

scientific article published on 5 December 2014

Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring.

scientific article published on 02 May 2017

Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure

scientific article

Amino acid production exceeds plant nitrogen demand in Siberian tundra

article

Aquatic and terrestrial cyanobacteria produce methane

scientific article published on 15 January 2020

Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial

scientific article

Biogeochemical dynamics during snowmelt and in summer in the Alps

scientific article published in 2022

CREST--classification resources for environmental sequence tags

scientific article

Coupling of the pathway of sulphur oxidation to dioxygen reduction: characterization of a novel membrane-bound thiosulphate:quinone oxidoreductase

scientific article

Desiccation time and rainfall control gaseous carbon fluxes in an intermittent stream

scientific article published in 2021

Differential effects of monensin and a blend of essential oils on rumen microbiota composition of transition dairy cows.

scientific article

Dissimilatory oxidation and reduction of elemental sulfur in thermophilic archaea

scientific article published on February 2004

Distinct microbial communities associated with buried soils in the Siberian tundra

scientific article

Diversity and degradative capabilities of bacteria and fungi isolated from oil-contaminated and hydrocarbon-polluted soils in Kazakhstan

scientific article published on 25 July 2019

Down-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warming

scientific article published on 25 March 2022

Draft Genome Sequence of "Candidatus Methanomethylophilus" sp. 1R26, Enriched from Bovine Rumen, a Methanogenic Archaeon Belonging to the Methanomassiliicoccales Order.

scientific article published on 18 February 2016

Effects of soil organic matter properties and microbial community composition on enzyme activities in cryoturbated arctic soils

scientific article

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.

scientific article

Fate of carbohydrates and lignin in north-east Siberian permafrost soils

scholarly article by Thao Thi Dao et al published January 2018 in Soil Biology and Biochemistry

From Understanding to Sustainable Use of Peatlands: The WETSCAPES Approach

scientific article published on 12 March 2020

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

scientific article

Fungi in Permafrost-Affected Soils of the Canadian Arctic: Horizon- and Site-Specific Keystone Taxa Revealed by Co-Occurrence Network

scientific article published in 2021

Gene expression of lactobacilli in murine forestomach biofilms.

scientific article

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

article

Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization

scientific article published on 06 October 2021

Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil

scientific article published on August 2014

Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis

scientific article

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis

scientific article

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.

scientific article published on 31 January 2017

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels.

scientific article published on 21 April 2018

Lignin Preservation and Microbial Carbohydrate Metabolism in Permafrost Soils

scientific article published on 07 January 2022

Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes

scientific article published in 2022

Long-Term Rewetting of Three Formerly Drained Peatlands Drives Congruent Compositional Changes in Pro- and Eukaryotic Soil Microbiomes through Environmental Filtering

scientific article published on 10 April 2020

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

scientific article published on 09 January 2014

Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes

scientific article published on 23 December 2016

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria

scientific article published in 2024

Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming.

scientific article published on 27 April 2015

Metatranscriptomic analysis of arctic peat soil microbiota

scientific article

Metatranscriptomic census of active protists in soils

scientific article published on 27 March 2015

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

scientific article

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen.

scientific article published on January 2013

Methylotrophic methanogens everywhere - physiology and ecology of novel players in global methane cycling

scientific article published on 01 December 2019

Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics.

scientific article published on 27 October 2013

Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea.

scientific article

Nitrification in terrestrial hot springs of Iceland and Kamchatka.

scientific article

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

scientific article

Nitrogen dynamics in Turbic Cryosols from Siberia and Greenland

scientific article published on December 2013

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

scientific article

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms.

scientific article published on 6 September 2012

Pack hunting by a common soil amoeba on nematodes.

scientific article published on 16 June 2015

Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences

scientific article published on 26 November 2015

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

scientific article

Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils

scientific article

Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus.

scientific article published in January 2006

Properties and bioavailability of particulate and mineral-associated organic matter in Arctic permafrost soils, Lower Kolyma Region, Russia

article

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

scientific article published on 18 February 2014

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

scientific article

Responses of the terrestrial ammonia-oxidizing archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidizing bacterium Nitrosospira multiformis to nitrification inhibitors.

scientific article

Rewetting does not return drained fen peatlands to their old selves

scientific article

Significance of dark CO2 fixation in arctic soils

scholarly article by Hana Šantrůčková et al published April 2018 in Soil Biology and Biochemistry

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

scientific article

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland

scientific article published in 2014

Substrate Pathways and Mechanisms of Inhibition in the Sulfur Oxygenase Reductase of Acidianus Ambivalens

scientific article

Sulfur-oxidizing chemolithotrophic proteobacteria dominate the microbiota in high arctic thermal springs on Svalbard.

scientific article

Temperature response of permafrost soil carbon is attenuated by mineral protection

scientific article published on 01 June 2018

The effect of warming on the vulnerability of subducted organic carbon in arctic soils

article

The impact of summer drought on peat soil microbiome structure and function-A multi-proxy-comparison

scientific article published in 2022

The soil food web revisited: Diverse and widespread mycophagous soil protists

article

The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?

scientific article published on 21 March 2021

The sulfur oxygenase reductase from Acidianus ambivalens is an icosatetramer as shown by crystallization and Patterson analysis

scientific article published on 19 December 2004

Type I interferons have opposing effects during the emergence and recovery phases of colitis.

scientific article

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes.

scientific article published on 17 April 2018

Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens

scientific article published on 13 May 2016

List of works by Tim Urich

A Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function

A plant–microbe interaction framework explaining nutrient effects on primary production

A proteomic approach toward the selection of proteins with enhanced intrinsic conformational stability.

Adaptation of soil microbial community structure and function to chronic metal contamination at an abandoned Pb-Zn mine.

Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring.

Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure

Amino acid production exceeds plant nitrogen demand in Siberian tundra

Aquatic and terrestrial cyanobacteria produce methane

Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial

Biogeochemical dynamics during snowmelt and in summer in the Alps

CREST--classification resources for environmental sequence tags

Coupling of the pathway of sulphur oxidation to dioxygen reduction: characterization of a novel membrane-bound thiosulphate:quinone oxidoreductase

Desiccation time and rainfall control gaseous carbon fluxes in an intermittent stream

Differential effects of monensin and a blend of essential oils on rumen microbiota composition of transition dairy cows.

Dissimilatory oxidation and reduction of elemental sulfur in thermophilic archaea

Distinct microbial communities associated with buried soils in the Siberian tundra

Diversity and degradative capabilities of bacteria and fungi isolated from oil-contaminated and hydrocarbon-polluted soils in Kazakhstan

Down-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warming

Draft Genome Sequence of "Candidatus Methanomethylophilus" sp. 1R26, Enriched from Bovine Rumen, a Methanogenic Archaeon Belonging to the Methanomassiliicoccales Order.

Effects of soil organic matter properties and microbial community composition on enzyme activities in cryoturbated arctic soils

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.

Fate of carbohydrates and lignin in north-east Siberian permafrost soils

From Understanding to Sustainable Use of Peatlands: The WETSCAPES Approach

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

Fungi in Permafrost-Affected Soils of the Canadian Arctic: Horizon- and Site-Specific Keystone Taxa Revealed by Co-Occurrence Network

Gene expression of lactobacilli in murine forestomach biofilms.

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization

Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil

Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels.

Lignin Preservation and Microbial Carbohydrate Metabolism in Permafrost Soils

Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes

Long-Term Rewetting of Three Formerly Drained Peatlands Drives Congruent Compositional Changes in Pro- and Eukaryotic Soil Microbiomes through Environmental Filtering

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria

Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming.

Metatranscriptomic analysis of arctic peat soil microbiota

Metatranscriptomic census of active protists in soils

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen.

Methylotrophic methanogens everywhere - physiology and ecology of novel players in global methane cycling

Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics.

Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea.

Nitrification in terrestrial hot springs of Iceland and Kamchatka.

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

Nitrogen dynamics in Turbic Cryosols from Siberia and Greenland

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms.

Pack hunting by a common soil amoeba on nematodes.

Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils

Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus.

Properties and bioavailability of particulate and mineral-associated organic matter in Arctic permafrost soils, Lower Kolyma Region, Russia

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

Responses of the terrestrial ammonia-oxidizing archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidizing bacterium Nitrosospira multiformis to nitrification inhibitors.

Rewetting does not return drained fen peatlands to their old selves

Significance of dark CO2 fixation in arctic soils

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland

Substrate Pathways and Mechanisms of Inhibition in the Sulfur Oxygenase Reductase of Acidianus Ambivalens

Sulfur-oxidizing chemolithotrophic proteobacteria dominate the microbiota in high arctic thermal springs on Svalbard.

Temperature response of permafrost soil carbon is attenuated by mineral protection

The effect of warming on the vulnerability of subducted organic carbon in arctic soils

The impact of summer drought on peat soil microbiome structure and function-A multi-proxy-comparison

The soil food web revisited: Diverse and widespread mycophagous soil protists

The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?

The sulfur oxygenase reductase from Acidianus ambivalens is an icosatetramer as shown by crystallization and Patterson analysis

Type I interferons have opposing effects during the emergence and recovery phases of colitis.

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes.

Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens