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List of works by James J. Cai

A framework radiation hybrid map of buffalo chromosome 1 ordering scaffolds from buffalo genome sequence assembly

scientific article published on 27 October 2015

AEGS: identifying aberrantly expressed gene sets for differential variability analysis

scientific article published on 11 October 2017

Aberrant gene expression in humans

scientific article

Accelerated Evolutionary Rate May Be Responsible for the Emergence of Lineage-Specific Genes in Ascomycota

article

Adaptive human CDKAL1 variants underlie hormonal response variations at the enteroinsular axis

scientific article

Adaptive selection of an incretin gene in Eurasian populations.

scientific article

Additive, epistatic, and environmental effects through the lens of expression variability QTL in a twin cohort

scientific article published on 02 December 2013

Aging Shapes the Population-Mean and -Dispersion of Gene Expression in Human Brains

scientific article published on 03 August 2016

Commonality in dysregulated expression of gene sets in cortical brains of individuals with autism, schizophrenia, and bipolar disorder

article

Context-dependent robustness to 5′ splice site polymorphisms in human populations ⬇️

scientific article published on December 28, 2010

Diverse splicing patterns of exonized Alu elements in human tissues

scientific article

Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action.

scientific article published in November 2016

Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus.

scientific article published on 19 November 2012

Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis.

scientific article

Expression profiling of disease progression in canine model of Duchenne muscular dystrophy

scientific article published on 19 March 2018

Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension

scientific article

Genetic variants contribute to gene expression variability in humans

scientific article

Genome-wide association study to identify potential genetic modifiers in a canine model for Duchenne muscular dystrophy

scientific article

Genomic and experimental evidence for a potential sexual cycle in the pathogenic thermal dimorphic fungus Penicillium marneffei.

scientific article

High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei.

scientific article published on 13 August 2010

Identification of metabolic modifiers that underlie phenotypic variations in energy-balance regulation.

scientific article

Identification of metabolic modifiers that underlie phenotypic variations in energy-balance regulation. Diabetes 2011;60:726–734.

scientific article published on 16 November 2013

Integrating multiple fitting regression and Bayes decision for cancer diagnosis with transcriptomic data from tumor-educated blood platelets

scientific article published on 30 August 2017

Long noncoding RNA MALAT1 regulates generation of reactive oxygen species and the insulin responses in male mice.

scientific article published on 22 March 2018

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution

scientific article

Morphotype transition and sexual reproduction are genetically associated in a ubiquitous environmental pathogen

scientific article (publication date: June 2014)

Novel Partitivirus Enhances Virulence of and Causes Aberrant Gene Expression in Talaromyces marneffei.

scientific article

Overdispersed gene expression in schizophrenia

scientific article published on 03 April 2020

PGEToolbox: A Matlab toolbox for population genetics and evolution.

scientific article

Pervasive hitchhiking at coding and regulatory sites in humans

scientific article

Population-level expression variability of mitochondrial DNA-encoded genes in humans.

scientific article published on 8 January 2014

Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes

scientific article

SBEToolbox: A Matlab Toolbox for Biological Network Analysis.

scientific article published on September 2013

Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei.

scientific article

Simulating variance heterogeneity in quantitative genome wide association studies

scientific article published on 21 March 2018

Single-Cell Expression Variability Implies Cell Function

scientific article published on 19 December 2019

Single-cell RNA sequencing of a European and an African lymphoblastoid cell line

scientific article published on 04 July 2019

The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats

scientific article

The lncRNA RZE1 Controls Cryptococcal Morphological Transition

scientific article

The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts

scientific article published on 01 December 2003

Widespread establishment and regulatory impact of Alu exons in human genes ⬇️

scientific article published on January 31, 2011

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