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List of works by Stephan Preibisch

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures

scientific article published on 29 August 2008

"Hook"-calibration of GeneChip-microarrays: theory and algorithm

scientific article published on 29 August 2008

A Connectome of the Male Drosophila Ventral Nerve Cord

preprint

A Connectome of the Male Drosophila Ventral Nerve Cord

preprint article published on 23 May 2024

An automated workflow for parallel processing of large multiview SPIM recordings

scientific article published on December 2015

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

scientific article

Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays

scientific article

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

BigDataViewer: visualization and processing for large image data sets

scientific article

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

scientific article published on 05 August 2019

Bioimage Informatics in the context of Drosophila research

scientific article published on 13 April 2014

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.

scientific article published on 30 November 2018

Calibration of microarray gene-expression data

scientific article

Efficient Bayesian-based multiview deconvolution

scientific article

Fiji: an open-source platform for biological-image analysis

scientific article

Gene expression divergence recapitulates the developmental hourglass model

scientific article

GeneChip microarrays—signal intensities, RNA concentrations and probe sequences

article

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

article

Globally optimal stitching of tiled 3D microscopic image acquisitions

scientific article

ImgLib2—generic image processing in Java.

scientific article

MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules

article

Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

scientific article published on 29 March 2018

Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking

scientific article

OME-Zarr: a cloud-optimized bioimaging file format with international community support

scientific article published in 2023

OpenSPIM: an open-access light-sheet microscopy platform.

scientific article published on 9 June 2013

Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells

scientific article published on 12 March 2019

Planar cell polarity signalling regulates cell adhesion properties in progenitors of the zebrafish laterality organ

scientific article published on 15 September 2010

Regulatory encoding of quantitative variation in spatial activity of a <i>Drosophila</i> enhancer

scientific article published on 02 December 2020

Restoration of Uneven Illumination in Light Sheet Microscopy Images

article published in 2011

Software for bead-based registration of selective plane illumination microscopy data

scientific article published in June 2010

Specific and nonspecific hybridization of oligonucleotide probes on microarrays

scientific article

TrakEM2 software for neural circuit reconstruction

scientific article (publication date: 2012)

Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development

scientific article

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