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List of works by Harm Nijveen

A footprint of desiccation tolerance in the genome of Xerophyta viscosa

scientific article published on 27 March 2017

A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds

scientific article published on 26 March 2015

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

scientific article published on 02 April 2019

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

scientific article published on 12 March 2019

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

scientific article

Benchmarking protein classification algorithms via supervised cross-validation.

scientific article

Beyond genomic variation--comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage

scientific article

Birth, death, and diversification of mobile promoters in prokaryotes

scientific article

Constraint-based probabilistic learning of metabolic pathways from tomato volatiles

scientific article published on 30 May 2009

Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.

scientific article published on 5 December 2017

CyLineUp: A Cytoscape app for visualizing data in network small multiples.

scientific article

Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings

scientific article published on 17 May 2020

Discovery of T cell epitopes implementing HLA-peptidomics into a reverse immunology approach.

scientific article published on 8 March 2013

Dormancy cycling: translation-related transcripts are the main difference between dormant and non-dormant seeds in the field

scientific article published on 30 November 2019

Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways

scientific article published on 6 January 2016

Elucidating and mining the Tulipa and Lilium transcriptomes

scientific article

Fire Usage and Ancient Hominin Detoxification Genes: Protective Ancestral Variants Dominate While Additional Derived Risk Variants Appear in Modern Humans

scientific article

GeneNetwork: framework for web-based genetics

article

HSPVdb--the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands

scientific article published on 2 December 2010

Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds

scientific article published on 28 March 2019

Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis.

scientific article published on 18 September 2014

Learning from Co-expression Networks: Possibilities and Challenges

scientific article

Molecular Regulation of Temperature-Dependent Floral Induction in Tulipa gesneriana

scientific article

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks

scientific article

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks.

scientific article published in September 2015

Mutations in the RET proto-oncogene in sporadic medullary thyroid carcinomas

Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana

scientific article published on 22 September 2020

Obituary: In memory of Jack Leunissen

scientific article (publication date: May 2013)

Primer3Plus, an enhanced web interface to Primer3

scientific article (publication date: 8 May 2007)

ProGMap: an integrated annotation resource for protein orthology

scientific article published on 03 June 2009

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins

scientific article

Promoter propagation in prokaryotes

scientific article published on 28 August 2012

Promoter reuse in prokaryotes

scientific article (publication date: November 2012)

Propagation of errors in citation networks: a study involving the entire citation network of a widely cited paper published in, and later retracted from, the journal Nature

scientific article published on 3 May 2016

QualitySNPng: a user-friendly SNP detection and visualization tool

scientific article published on 30 April 2013

Regulatory Elements in the Rat βB2-crystallin Promoter

scientific article published on 01 November 2001

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.

scientific article published on 19 May 2015

The human leukocyte antigen-presented ligandome of B lymphocytes

scientific article published on 12 March 2013

Time-series analysis of the transcriptome of the re-establishment of desiccation tolerance by ABA in germinated Arabidopsis thaliana seeds

scientific article

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure.

scientific article published on July 2006

Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control.

scientific article published on 27 October 2017

Understanding and identifying amino acid repeats.

scientific article published on July 2014

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

scientific article published on 01 January 2020

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