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List of works by Antti Karkman

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

scientific article

Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load

scientific article

An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community

scientific article

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence

article

Antibiotic-Resistance Genes in Waste Water

scientific article published on 12 October 2017

Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments.

scientific article published on 13 March 2016

Bacterial communities in Arctic first-year drift ice during the winter/spring transition

scientific article

Cold temperature decreases bacterial species richness in nitrogen-removing bioreactors treating inorganic mine waters.

scientific article

Community-led, integrated, reproducible multi-omics with anvi'o

scientific article published on 01 January 2021

Cyanobacteria as a Source for Novel Anti-Leukemic Compounds

scientific article published on 26 August 2015

Discovery of bacterial polyhydroxyalkanoate synthase (PhaC)-encoding genes from seasonal Baltic Sea ice and cold estuarine waters

scientific article published on 4 October 2014

Enterococcus rivorum sp. nov., from water of pristine brooks.

scientific article

Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics

scientific article published on 21 October 2016

Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

scientific article published in Nature Communications

Fish farming affects the abundance and diversity of the mercury resistance gene merA in marine sediments.

scientific article

High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant.

scientific article published on 31 January 2016

Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent.

scientific article published on 4 March 2018

Influence of Manure Application on the Environmental Resistome under Finnish Agricultural Practice with Restricted Antibiotic Use.

scientific article published on 28 April 2017

Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements

scientific article published in Nature Communications

Nature-oriented daycare diversifies skin microbiota in children - no robust association with allergies

scientific article published on 8 February 2018

Patterns in the skin microbiota differ in children and teenagers between rural and urban environments

scientific article published on 31 March 2017

Predicting clinical resistance prevalence using sewage metagenomic data

scientific article published on 26 November 2020

Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow.

scientific article

Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia

scientific article

Sulphonamide and trimethoprim resistance genes persist in sediments at Baltic Sea aquaculture farms but are not detected in the surrounding environment

scientific article

Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure.

scientific article

The ecology of human microbiota: dynamics and diversity in health and disease.

scientific article

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