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List of works by Aleksey Porollo

A fast and robust protocol for metataxonomic analysis using RNAseq data

scientific article

A fungal P450 (CYP5136A3) capable of oxidizing polycyclic aromatic hydrocarbons and endocrine disrupting alkylphenols: role of Trp(129) and Leu(324).

scientific article

Accurate prediction of solvent accessibility using neural networks-based regression.

scientific article

Analysis of current antifungal agents and their targets within the Pneumocystis carinii genome.

scientific article

Bioinformatics Approaches to the Understanding of Molecular Mechanisms in Antimicrobial Resistance

scientific article published on 18 February 2020

CYP63A2, a Catalytically Versatile Fungal P450 Monooxygenase Capable of Oxidizing Higher-Molecular-Weight Polycyclic Aromatic Hydrocarbons, Alkylphenols, and Alkanes ⬇️

scientific article published on February 15, 2013

CoeViz: A Web-Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices.

scientific article published on 13 January 2018

CoeViz: a web-based tool for coevolution analysis of protein residues.

scientific article

Combining prediction of secondary structure and solvent accessibility in proteins

scientific article (publication date: 15 May 2005)

Draft Assembly and Annotation of the Pneumocystis carinii Genome

scientific article published on 01 January 2006

EC2KEGG: a command line tool for comparison of metabolic pathways.

scientific article published on 2 September 2014

Effects of parabens on adipocyte differentiation.

scientific article published on 5 September 2012

Enhanced prediction of conformational flexibility and phosphorylation in proteins.

scientific article published in January 2010

Gene Expression of Pneumocystis murina after Treatment with Anidulafungin Results in Strong Signals for Sexual Reproduction, Cell Wall Integrity, and Cell Cycle Arrest, Indicating a Requirement for Asci Formation for Proliferation

scientific article published on 20 February 2018

Granulocyte macrophage-colony stimulating factor induced Zn sequestration enhances macrophage superoxide and limits intracellular pathogen survival

scientific article

Heparin-binding motifs and biofilm formation by Candida albicans.

scientific article

Interleukin-6 receptor enhances early colonization of the murine omentum by upregulation of a mannose family receptor, LY75, in ovarian tumor cells

scientific article

Large-scale characterization of introns in the Pneumocystis carinii genome

scientific article published in January 2006

Mitochondria-specific transgenic overexpression of connexin-43 simulates preconditioning-induced cytoprotection of stem cells ⬇️

scientific article published on September 10, 2010

MutaCYP: Classification of missense mutations in human cytochromes P450

scientific article

POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations.

scientific article

Prediction-based fingerprints of protein-protein interactions.

scientific article

Rational engineering of the fungal P450 monooxygenase CYP5136A3 to improve its oxidizing activity toward polycyclic aromatic hydrocarbons

scientific article published on 31 July 2013

Survey of public domain software for docking simulations and virtual screening.

scientific article

Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite

scientific article

Tumor-suppressing Function of Caspase-2 Requires Catalytic Site Cys-320 and Site Ser-139 in Mice ⬇️

scientific article published on March 6, 2012

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D

scientific article

Zinc sequestration: arming phagocyte defense against fungal attack

scientific article

p62 is a key regulator of nutrient sensing in the mTORC1 pathway.

scientific article

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