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List of works by Ian Small

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

scientific article

A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria

scientific article

A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins?

scientific article published on May 2011

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

scientific article

A comparison of cytoplasmic revertants to fertility from different CMS-S maize sources.

scientific article published in October 1988

A hypothesis on the identification of the editing enzyme in plant organelles

article

A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons

scientific article

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts.

scientific article published on 07 June 2012

A single base change prevents import of cytosolic tRNAAla into mitochondria in transgenic plants

article

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

scientific article published on 24 November 2009

AEF1/MPR25 is implicated in RNA editing of plastidatpFand mitochondrialnad5, and also promotesatpFsplicing in Arabidopsis and rice

scientific article published on 01 March 2015

Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species

scientific article published on 19 January 2011

Albinism in Plants: A Major Bottleneck in Wide Hybridization, Androgenesis and Doubled Haploid Culture

article

An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.

scientific article published on 4 February 2011

Approaches to defining dual-targeted proteins in Arabidopsis

scientific article published on 11 December 2008

Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts.

scientific article published on 16 November 2011

CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

scientific article published on 23 August 2008

Characterization of the nuclear gene encoding chloroplast ribosomal protein S13 from Arabidopsis thaliana.

scientific article

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs.

scholarly article

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Cofactor-independent RNA editing by a synthetic S-type PPR protein

scientific article published on 23 December 2021

Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses.

scientific article published in March 2018

Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis.

scientific article

Correction: The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

scientific article published on 14 September 2015

Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria

scientific article published in November 2003

Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.

scientific article

Dual targeting to mitochondria and chloroplasts.

scientific article

Duplication and Quadruplication of Arabidopsis thaliana Cysteinyl- and Asparaginyl-tRNA Synthetase Genes of Organellar Origin

article

Editing and import: Strategies for providing plant mitochondria with a complete set of functional transfer RNAs

scientific article (publication date: 1996)

Editing of Chloroplast rps14 by PPR Editing Factor EMB2261 Is Essential for Arabidopsis Development.

scientific article published on 20 June 2018

Emerging tools for synthetic biology in plants

article

Establishment of photosynthesis is controlled by two distinct regulatory phases

scientific article

European consortia building integrated resources for Arabidopsis functional genomics.

scientific article published in October 2003

Evolutionary Model of Plastidial RNA Editing in Angiosperms Presumed from Genome-Wide Analysis of Amborella trichopoda

scientific article published on 01 October 2019

Evolutionary plasticity of restorer-of-fertility-like proteins in rice

scientific article published on 24 October 2016

Expression ofArabidopsis thalianaMitochondrial Alanyl-tRNA Synthetase Is Not Sufficient to Trigger Mitochondrial Import of tRNAAlain Yeast

scientific article published in Journal of Biological Chemistry

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants.

scientific article

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

scientific article

Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae)

scientific article published on 07 December 2018

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

scientific article

Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana

scientific article published on 16 November 2007

High intraspecific diversity of Restorer-of-fertility-like genes in barley

article

Identification of a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts

scientific article published on 3 August 2010

Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide‐repeat protein family ⬇️

scientific article published on June 1, 2003

Implication of 5'-flanking sequence elements in expression of a plant tRNA(Leu) gene

scientific article published on 01 January 1998

In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts

scientific article

In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.).

scientific article

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia.

scientific article published on 15 December 2015

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed ⬇️

scientific article (publication date: 18 October 2013)

Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics

scientific article published on 04 January 2020

MRPS27 is a pentatricopeptide repeat domain protein required for the translation of mitochondrially encoded proteins.

scientific article

Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.

scientific article published on 19 August 2016

Mitochondrial genomes as living 'fossils'

scientific article (publication date: 15 April 2013)

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Mutations in an Arabidopsis mitochondrial transcription termination factor-related protein enhance thermotolerance in the absence of the major molecular chaperone HSP101.

scientific article published on 31 August 2012

Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.

scientific article published on 17 October 2008

Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination.

scientific article published on 16 February 2012

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

scientific article published on 4 January 2011

Organellar RNA editing

scientific article

PPR-SMRs: ancient proteins with enigmatic functions

scientific article published on 28 August 2013

Pentatricopeptide Repeat Proteins in Plants

scientific article (publication date: 29 April 2014)

Pentatricopeptide repeat proteins in Trypanosoma brucei function in mitochondrial ribosomes.

scientific article

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts

article by Kenji Okuda et al published January 2009 in The Plant Cell

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

scientific article

Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana.

scientific article

Plant RNA editing.

scientific article published on 26 March 2010

Plant cytosolic tRNAHis possesses an exceptional C54 in the canonical TPsiC loop.

scientific article published on June 1998

Plant organellar RNA editing: what 30 years of research has revealed

scientific article published on 12 December 2019

Plant organellar RNA maturation

scientific article published in 2023

Plastid signalling to the nucleus and beyond.

scientific article published on October 2008

Plastid tRNA genes trnC-GCA and trnN-GUU are essential for plant cell development.

scientific article

Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae

article

Potential dual targeting of an Arabidopsis archaebacterial-like histidyl-tRNA synthetase to mitochondria and chloroplasts.

scientific article

Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.

scientific article published on 3 February 2015

Protein Complexes Implicated in RNA Editing in Plant Organelles

scientific article published on 25 September 2017

Purification of mitochondria and mitochondrial nucleic acids from embryogenic suspension cultures of a gymnosperm, Larix x leptoeuropaea

scientific article published on May 1995

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing

scientific article published on 6 November 2014

Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes ⬇️

scientific article (publication date: July 2011)

Recent range expansion in Australian hummock grasses () inferred using genotyping-by-sequencing

article

Recent surprises in protein targeting to mitochondria and plastids.

scientific article published on 27 September 2006

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

scientific article

Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night.

scientific article published on 12 August 2009

Role of editing in plant mitochondrial transfer RNAs.

scientific article

SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana

scientific article published on 23 January 2016

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

scientific article published on 24 November 2012

SUBA: the Arabidopsis Subcellular Database.

scientific article published on 28 October 2006

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

scientific article

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

scientific article

Sequence and transcript analysis of the Nco2.5 Ogura-specific fragment correlated with cytoplasmic male sterility in Brassica cybrids

scientific article published on November 1, 1992

Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants

scientific article published on 18 July 2019

Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa).

scientific article published on 28 July 2014

Striking differences in mitochondrial tRNA import between different plant species

scientific article published on 01 September 1996

Structure and expression of several bean (Phaseolus vulgaris) nuclear transfer RNA genes: relevance to the process of tRNA import into plant mitochondria.

scientific article published in March 1998

Surrogate mutants for studying mitochondrially encoded functions

scientific article published on 29 August 2013

Surveillance and cleavage of eukaryotic tRNAs

scientific article

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

scientific article

Targeted cleavage of mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria

article

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.

scientific article published on 29 December 2008

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

scientific article published on 8 May 2015

The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids

scientific article published in 2018

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing

scientific article published on 25 April 2013

The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript.

scientific article published on 23 December 2016

The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I.

scientific article

The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings

scientific article

The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes

scientific article published on 01 June 2000

The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts

scientific article published on 25 September 2019

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing ofndhD-1

scientific article published on 10 July 2014

The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis

scientific article published on 26 October 2010

The design and structural characterization of a synthetic pentatricopeptide repeat protein

scientific article

The evolution of RNA editing and pentatricopeptide repeat genes.

scientific article published on 09 May 2011

The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13 is a recent duplication of the gene encoding plastid S13

article

The genetic basis of cytoplasmic male sterility and fertility restoration in wheat

scientific article published on 15 February 2021

The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development

scientific article published on 23 March 2017

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic

scientific article

The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana.

scientific article published on 26 October 2007

The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.

scientific article published on 28 June 2008

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts

scientific article published on 20 October 2009

The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria

scientific article

The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus.

scientific article published on 28 December 2011

The potential for manipulating RNA with pentatricopeptide repeat proteins

scientific article published on 29 January 2014

The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA.

scientific article published on 21 January 2015

Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

scientific article published on 14 December 2019

Transactivation of a target gene using a suppressor tRNA in transgenic tobacco plants

article

Transfer RNA-mediated suppression of stop codons in protoplasts and transgenic plants

article

Transplastomic Arabidopsis plants at last

scientific article published on 01 March 2019

Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.

scientific article published on 21 September 2012

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family

scientific article

What Kind of Writer was Wilde? Editorial Practice and Canon-Formation

journal article; published in Journal of Victorian Culture in 2000

What can we do with 1000 plastid genomes?

scientific article published on 23 January 2017

[23] Transfer RNA import into plant mitochondria

article

mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis

scientific article published on 7 May 2013

nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function

scientific article published on 22 May 2012

nMAT4, a maturase factor required fornad1pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria

scientific article published in 2014

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