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List of works by David Osumi-Sutherland

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A strategy for building neuroanatomy ontologies

scientific article published on 07 March 2012

Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas

scholarly article published 1 June 2021

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

scientific article published on 08 November 2021

Bacterial Virus Ontology; Coordinating across Databases.

scientific article

CARO – The Common Anatomy Reference Ontology

article

Cell ontology in an age of data-driven cell classification

scientific article published on 21 December 2017

Cell type discovery using single-cell transcriptomics: implications for ontological representation.

scientific article published on 24 March 2018

Cell type ontologies of the Human Cell Atlas

peer-reviewed article published in November 2021

Cell types and ontologies of the Human Cell Atlas ⬇️

journal article published in 2021

Cell, Chemical and Anatomical Views of the Gene Ontology: Mapping to a Roche Controlled Vocabulary ⬇️

article

Dead simple OWL design patterns

scientific article

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

article by Sebastian Köhler et al published 8 January 2019 in Nucleic Acids Research

Expression Atlas update: gene and protein expression in multiple species

scientific article published on 19 November 2021

Finding our way through phenotypes

scientific article

Formalizing Insect Morphological Data: A Model-Based, Extensible Insect Anatomy Ontology and Its Potential Applications in Biodiversity Research and Informatics

scientific article published on 18 January 2022

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

scientific article published on 01 October 2019

Gene Ontology Consortium: going forward

scientific article (publication date: 2015)

Guidelines for the functional annotation of microRNAs using the Gene Ontology.

scientific article published on 25 February 2016

Human Cell Atlas Ontology ⬇️

2018 article

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology

scientific article published in February 2018

Lab chiefs fear European rules will cost postdoc jobs

scientific article published on 01 September 2004

Meeting report: advancing practical applications of biodiversity ontologies

scientific article

Modularization for the Cell Ontology

Modularization for the Cell Ontology

scientific article published on 12 December 2011

Mondo: Unifying diseases for the world, by the world

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

scientific article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

PhenoImageShare: an image annotation and query infrastructure

scientific article

Representing virus-host interactions and other multi-organism processes in the Gene Ontology.

scientific article published on 28 July 2015

Sick veterans pin hopes on Gulf War inquiry

scientific article

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

scientific article published on 03 June 2019

Systematic analysis of experimental phenotype data reveals gene functions

scientific article

Taking shortcuts with OWL using safe macros

TermGenie - a web-application for pattern-based ontology class generation

scientific article published on 11 December 2014

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

scientific article

The Drosophila anatomy ontology

scientific article published on 18 October 2013

The Drosophila phenotype ontology

scientific article published on 18 October 2013

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The Virtual Fly Brain browser and query interface

scientific article published on 16 December 2011

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

scientific article published on 22 March 2022

Toward a minimal information reporting standard about new cell types ⬇️

preprint

Uberon

ontology

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