List of works - Georgios V. Gkoutos

-Omics biomarker identification pipeline for translational medicine

scientific article published on 14 May 2019

A Causal Web between Chronotype and Metabolic Health Traits

scientific article published in 2021

A Practical Guide to Assess the Reproducibility of Echocardiographic Measurements

scientific article published on 22 October 2019

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

article

A common layer of interoperability for biomedical ontologies based on OWL EL.

scientific article

A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text

scientific article published on 17 January 2021

Aber-OWL: a framework for ontology-based data access in biology ⬇️

scientific article

Allergic diseases and long-term risk of autoimmune disorders: longitudinal cohort study and cluster analysis

scientific article published on 14 November 2019

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study

scientific article

An integrative, translational approach to understanding rare and orphan genetically based diseases

scientific article published on April 2013

An ontology approach to comparative phenomics in plants

scientific article

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

scientific article

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases ⬇️

scientific article published on 08 June 2015

Analyzing gene expression data in mice with the Neuro Behavior Ontology

scientific article

Best behaviour? Ontologies and the formal description of animal behaviour

scientific article published on 28 July 2015

CRAVE: a database, middleware and visualization system for phenotype ontologies

scientific article published on 18 November 2004

Chemical machine vision: automated extraction of chemical metadata from raster images

scientific article published on September 2003

Cloud Computing Enabled Big Multi-Omics Data Analytics

publication published on 28 July 2021

Computational tools for comparative phenomics: the role and promise of ontologies

scientific article published on 20 July 2012

Data extraction for epidemiological research (DExtER): a novel tool for automated clinical epidemiology studies

scientific article published on 27 August 2020

Data-driven discovery and validation of circulating blood-based biomarkers associated with prevalent atrial fibrillation

scientific article published on 01 April 2019

Datamining with Ontologies

scientific article published on January 2016

DeepPVP: phenotype-based prioritization of causative variants using deep learning

scholarly article published 2 May 2018

DeepPVP: phenotype-based prioritization of causative variants using deep learning

scientific article published on 06 February 2019

DermO; an ontology for the description of dermatologic disease

scientific article published on 13 June 2016

Desiderata for the development of next-generation electronic health record phenotype libraries

scientific article published on 01 September 2021

Duplication of the mitochondrial control region is associated with increased longevity in birds ⬇️

scientific article published on 11 August 2016

EMPReSS: European mouse phenotyping resource for standardized screens

scientific article published on 12 April 2005

Entity/quality-based logical definitions for the human skeletal phenome using PATO

scientific article

Eumorphia and the European Mouse Phenotyping Resource for Standardized Screens (EMPReSS)

article

Evaluating the detection ability of a range of epistasis detection methods on simulated data for pure and impure epistatic models

scientific article published on 18 February 2022

Evaluation of research in biomedical ontologies ⬇️

scientific article published on September 8, 2012

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

scientific article published on 25 October 2011

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

scientific article

Fractal Analysis: Prognostic Value of Left Ventricular Trabecular Complexity Cardiovascular MRI in Participants with Hypertrophic Cardiomyopathy

scientific article published on 20 October 2020

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics ⬇️

scientific article published on June 17, 2012

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

scientific article

Improving ontologies by automatic reasoning and evaluation of logical definitions

scientific article

Inflammation and Brain Structure in Schizophrenia and Other Neuropsychiatric Disorders: A Mendelian Randomization Study

scientific article published on 01 May 2022

Integrating phenotype ontologies across multiple species

scientific article

Integrating phenotype ontologies with PhenomeNET.

scientific article published on 19 December 2017

Integrating systems biology models and biomedical ontologies

scientific article (publication date: 11 August 2011)

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

scientific article

JChemTidy: a tool for converting chemical Web document collections to an XHTML representation.

scientific article published on March 2001

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

scientific article published in January 2012

Linking common human diseases to their phenotypes; development of a resource for human phenomics

scientific article published on 23 August 2021

Lipid-facing correlated mutations and dimerization in G-protein coupled receptors

article

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction

scientific article published on 19 December 2019

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

scientific article published on 28 November 2018

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

scientific article

Mouse genetic and phenotypic resources for human genetics

scientific article

Mouse model phenotypes provide information about human drug targets

scientific article published on 24 October 2013

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

scientific article published on 02 August 2009

MouseFinder: Candidate disease genes from mouse phenotype data

scientific article

Multi-faceted semantic clustering with text-derived phenotypes

scientific article published on 27 September 2021

Multi-omics-based identification of atopic dermatitis target genes and their potential associations with metabolites and miRNAs

scientific article published on 15 December 2021

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

scientific article

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

scientific article published in Scientific Reports

Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes ⬇️

scientific article published on September 21, 2012

Ontology-based prediction of cancer driver genes

scientific article published on 22 November 2019

Ontology-based validation and identification of regulatory phenotypes

scientific article published on 01 September 2018

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

PIDO: the primary immunodeficiency disease ontology

scientific article published on 22 September 2011

PhenomeNET: a whole-phenome approach to disease gene discovery

scientific article

Phenotype ontologies for mouse and man: bridging the semantic gap.

scientific article

Phenotype ontologies: the bridge between genomics and evolution

scientific article published on 09 April 2007

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

scientific article published on 25 October 2012

Prevalence of admission plasma glucose in 'diabetes' or 'at risk' ranges in hospital emergencies with no prior diagnosis of diabetes by gender, age and ethnicity

scientific article published on 15 May 2020

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

scientific article published on 21 September 2012

Representing physiological processes and their participants with PhysioMaps

scientific article published on 15 April 2013

Risk Factors for COVID-19 versus non-COVID-19 related in-hospital and community deaths by Local Authority District in Great Britain

scientific article published on 24 May 2020

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

scientific article

Semantic prioritization of novel causative genomic variants

scientific article

Similarity-based search of model organism, disease and drug effect phenotypes

scientific article published on 19 February 2015

Symptoms and risk factors for long COVID in non-hospitalized adults

scientific article published in 2022

Systematic analysis of experimental phenotype data reveals gene functions

scientific article

The Drosophila phenotype ontology

scientific article published on 18 October 2013

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

scientific article (publication date: 2014)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

scientific article

The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions

scientific article (publication date: 30 August 2011)

The Units Ontology: a tool for integrating units of measurement in science

scientific article

The anatomy of phenotype ontologies: principles, properties and applications.

scientific article published on 06 April 2017

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

scientific article

The mouse pathology ontology, MPATH; structure and applications

scientific article published on 13 September 2013

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

scientific article published on January 2012

The role of ontologies in biological and biomedical research: a functional perspective

scientific article

Towards a Phenotypic Semantic Web

Towards similarity-based differential diagnostics for common diseases

scientific article published on 01 April 2021

Type 1 diabetes mellitus and risk of incident epilepsy: a population-based, open-cohort study.

scientific article

Uberon, an integrative multi-species anatomy ontology

scientific article

Uberon: towards a comprehensive multi-species anatomy ontology

Ultra-high Magnification Endocytoscopy and Molecular Markers for Defining Endoscopic and Histologic Remission in Ulcerative Colitis-An Exploratory Study to Define Deep Remission ⬇️

scientific article published on 01 October 2021

Unifying European Biodiversity Informatics (BioUnify)

scientific article published on 15 January 2016

Using AberOWL for fast and scalable reasoning over BioPortal ontologies

scientific article

Using ontologies to describe mouse phenotypes

scientific article

List of works by Georgios V. Gkoutos

-Omics biomarker identification pipeline for translational medicine

A Causal Web between Chronotype and Metabolic Health Traits

A Practical Guide to Assess the Reproducibility of Echocardiographic Measurements

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

A common layer of interoperability for biomedical ontologies based on OWL EL.

A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text

Aber-OWL: a framework for ontology-based data access in biology ⬇️

Allergic diseases and long-term risk of autoimmune disorders: longitudinal cohort study and cluster analysis

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study

An integrative, translational approach to understanding rare and orphan genetically based diseases

An ontology approach to comparative phenomics in plants

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases ⬇️

Analyzing gene expression data in mice with the Neuro Behavior Ontology

Best behaviour? Ontologies and the formal description of animal behaviour

CRAVE: a database, middleware and visualization system for phenotype ontologies

Chemical machine vision: automated extraction of chemical metadata from raster images

Cloud Computing Enabled Big Multi-Omics Data Analytics

Computational tools for comparative phenomics: the role and promise of ontologies

Data extraction for epidemiological research (DExtER): a novel tool for automated clinical epidemiology studies

Data-driven discovery and validation of circulating blood-based biomarkers associated with prevalent atrial fibrillation

Datamining with Ontologies

DeepPVP: phenotype-based prioritization of causative variants using deep learning

DeepPVP: phenotype-based prioritization of causative variants using deep learning

DermO; an ontology for the description of dermatologic disease

Desiderata for the development of next-generation electronic health record phenotype libraries

Duplication of the mitochondrial control region is associated with increased longevity in birds ⬇️

EMPReSS: European mouse phenotyping resource for standardized screens

Entity/quality-based logical definitions for the human skeletal phenome using PATO

Eumorphia and the European Mouse Phenotyping Resource for Standardized Screens (EMPReSS)

Evaluating the detection ability of a range of epistasis detection methods on simulated data for pure and impure epistatic models

Evaluation of research in biomedical ontologies ⬇️

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

Fractal Analysis: Prognostic Value of Left Ventricular Trabecular Complexity Cardiovascular MRI in Participants with Hypertrophic Cardiomyopathy

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics ⬇️

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

Improving ontologies by automatic reasoning and evaluation of logical definitions

Inflammation and Brain Structure in Schizophrenia and Other Neuropsychiatric Disorders: A Mendelian Randomization Study

Integrating phenotype ontologies across multiple species

Integrating phenotype ontologies with PhenomeNET.

Integrating systems biology models and biomedical ontologies

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

JChemTidy: a tool for converting chemical Web document collections to an XHTML representation.

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

Linking common human diseases to their phenotypes; development of a resource for human phenomics

Lipid-facing correlated mutations and dimerization in G-protein coupled receptors

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

Mouse genetic and phenotypic resources for human genetics

Mouse model phenotypes provide information about human drug targets

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

MouseFinder: Candidate disease genes from mouse phenotype data

Multi-faceted semantic clustering with text-derived phenotypes

Multi-omics-based identification of atopic dermatitis target genes and their potential associations with metabolites and miRNAs

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes ⬇️

Ontology-based prediction of cancer driver genes

Ontology-based validation and identification of regulatory phenotypes

Ontology-based validation and identification of regulatory phenotypes

Overview of the interactive task in BioCreative V

PIDO: the primary immunodeficiency disease ontology

PhenomeNET: a whole-phenome approach to disease gene discovery

Phenotype ontologies for mouse and man: bridging the semantic gap.

Phenotype ontologies: the bridge between genomics and evolution

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

Prevalence of admission plasma glucose in 'diabetes' or 'at risk' ranges in hospital emergencies with no prior diagnosis of diabetes by gender, age and ethnicity

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

Representing physiological processes and their participants with PhysioMaps

Risk Factors for COVID-19 versus non-COVID-19 related in-hospital and community deaths by Local Authority District in Great Britain

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

Semantic prioritization of novel causative genomic variants

Similarity-based search of model organism, disease and drug effect phenotypes

Symptoms and risk factors for long COVID in non-hospitalized adults

Systematic analysis of experimental phenotype data reveals gene functions

The Drosophila phenotype ontology

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data