List of works - Georgios V. Gkoutos

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

scientific article (publication date: 2014)

Uberon, an integrative multi-species anatomy ontology

scientific article

Using ontologies to describe mouse phenotypes

scientific article

Integrating phenotype ontologies across multiple species

scientific article

PhenomeNET: a whole-phenome approach to disease gene discovery

scientific article

The role of ontologies in biological and biomedical research: a functional perspective

scientific article

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

scientific article

Phenotype ontologies: the bridge between genomics and evolution

scientific article published on 09 April 2007

Entity/quality-based logical definitions for the human skeletal phenome using PATO

scientific article

Mouse genetic and phenotypic resources for human genetics

scientific article

MouseFinder: Candidate disease genes from mouse phenotype data

scientific article

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

scientific article published on 25 October 2012

Integrating systems biology models and biomedical ontologies

scientific article (publication date: 11 August 2011)

Phenotype ontologies for mouse and man: bridging the semantic gap.

scientific article

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

scientific article

The Units Ontology: a tool for integrating units of measurement in science

scientific article

Evaluation of research in biomedical ontologies

scientific article published on September 8, 2012

EMPReSS: European mouse phenotyping resource for standardized screens

scientific article published on 12 April 2005

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

scientific article published on June 17, 2012

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

scientific article

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

scientific article published on 08 June 2015

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

scientific article published on 25 October 2011

Aber-OWL: a framework for ontology-based data access in biology

scientific article

Mouse model phenotypes provide information about human drug targets

scientific article published on 24 October 2013

A common layer of interoperability for biomedical ontologies based on OWL EL.

scientific article

The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions

scientific article (publication date: 30 August 2011)

The mouse pathology ontology, MPATH; structure and applications

scientific article published on 13 September 2013

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

An ontology approach to comparative phenomics in plants

scientific article

Improving ontologies by automatic reasoning and evaluation of logical definitions

scientific article

The anatomy of phenotype ontologies: principles, properties and applications.

scientific article published on 06 April 2017

Lipid-facing correlated mutations and dimerization in G-protein coupled receptors

article

Semantic prioritization of novel causative genomic variants

scientific article

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

scientific article

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

scientific article published on January 2012

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

scientific article published on 02 August 2009

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

scientific article

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

scientific article published in January 2012

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

scientific article

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

scientific article

Analyzing gene expression data in mice with the Neuro Behavior Ontology

scientific article

Systematic analysis of experimental phenotype data reveals gene functions

scientific article

An integrative, translational approach to understanding rare and orphan genetically based diseases

scientific article published on April 2013

The Drosophila phenotype ontology

scientific article published on 18 October 2013

Data-driven discovery and validation of circulating blood-based biomarkers associated with prevalent atrial fibrillation

scientific article published on 01 April 2019

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

scientific article

Integrating phenotype ontologies with PhenomeNET.

scientific article published on 19 December 2017

Computational tools for comparative phenomics: the role and promise of ontologies

scientific article published on 20 July 2012

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

scientific article

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study

scientific article

List of works by Georgios V. Gkoutos

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Uberon, an integrative multi-species anatomy ontology

Using ontologies to describe mouse phenotypes

Integrating phenotype ontologies across multiple species

PhenomeNET: a whole-phenome approach to disease gene discovery

The role of ontologies in biological and biomedical research: a functional perspective

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics

Phenotype ontologies: the bridge between genomics and evolution

Entity/quality-based logical definitions for the human skeletal phenome using PATO

Mouse genetic and phenotypic resources for human genetics

MouseFinder: Candidate disease genes from mouse phenotype data

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

Integrating systems biology models and biomedical ontologies

Phenotype ontologies for mouse and man: bridging the semantic gap.

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

The Units Ontology: a tool for integrating units of measurement in science

Evaluation of research in biomedical ontologies

EMPReSS: European mouse phenotyping resource for standardized screens

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

Aber-OWL: a framework for ontology-based data access in biology

Mouse model phenotypes provide information about human drug targets

A common layer of interoperability for biomedical ontologies based on OWL EL.

The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions

The mouse pathology ontology, MPATH; structure and applications

Overview of the interactive task in BioCreative V

An ontology approach to comparative phenomics in plants

Improving ontologies by automatic reasoning and evaluation of logical definitions

The anatomy of phenotype ontologies: principles, properties and applications.

Lipid-facing correlated mutations and dimerization in G-protein coupled receptors

Semantic prioritization of novel causative genomic variants

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Analyzing gene expression data in mice with the Neuro Behavior Ontology

Systematic analysis of experimental phenotype data reveals gene functions

An integrative, translational approach to understanding rare and orphan genetically based diseases

The Drosophila phenotype ontology

Data-driven discovery and validation of circulating blood-based biomarkers associated with prevalent atrial fibrillation

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

Integrating phenotype ontologies with PhenomeNET.

Computational tools for comparative phenomics: the role and promise of ontologies

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study