List of works by Simon Jupp

A Flexible API and Editor for SKOS

scientific article published in iswc2008 posters and demonstrations

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A compendium of uniformly processed human gene expression and splicing quantitative trait loci

scientific article published on 07 September 2021

A new Ontology Lookup Service at EMBL-EBI ⬇️

A user-centred evaluation framework for the Sealife semantic web browsers

scientific article published in October 2009

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Collaborative Ontology Development Using the Webulous Architecture and Google App ⬇️

article

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

scientific article

Developing a kidney and urinary pathway knowledge base ⬇️

scientific article

Developing a web-based SKOS editor

scientific article

ELIXIR biovalidator for semantic validation of life science metadata

scientific article published in 2022

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments

scientific article

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

scientific article

Expression Atlas update: from tissues to single cells

scientific article published on 01 January 2020

Features of a FAIR vocabulary ⬇️

Harmonising phenomics information for a better interoperability in the rare disease field

scientific article published on 6 February 2018

Human Cell Atlas Ontology ⬇️

2018 article

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Issues in learning an ontology from text

scientific article

Knowledge Representation for Web Navigation ⬇️

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation

scientific article

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL

scientific article

OLS Client and OLS Dialog: Open source tools to annotate public omics datasets.

scientific article published on 09 August 2017

Ontology mapping for semantically enabled applications

scientific article published on 31 May 2019

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics

scientific article published on 12 October 2020

Populous: A Tool For Populating OWL Ontologies From Templates

article

Populous: A Tool for Populating Templates for OWL Ontologies ⬇️

Populous: a tool for building OWL ontologies from templates

scientific article

Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease

scientific article published on 15 March 2016

SKOS with OWL: Don’t be Full-ish! ⬇️

scientific article

Semantic Web Atlas: Putting Gene Expression Data into Biological Context ⬇️

article

Stealthy annotation of experimental biology by spreadsheets

Ten Simple Rules for Selecting a Bio-ontology

scientific article

The EBI RDF platform: linked open data for the life sciences

scientific article

The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research

scientific article published on 21 November 2019

The KUPKB: a novel Web application to access multiomics data on kidney disease

scientific article

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases

scientific article

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The cellular microscopy phenotype ontology

scientific article published on 18 May 2016

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

article published in 2016

Using Ontologies and Vocabularies for Dynamic Linking

article

Using semantic web technologies to manage complexity and change in biomedical data

scientific article

Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates

scientific article published on April 2016

eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs

scientific article

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