List of works - Atsuko Yamaguchi

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

scientific article published on July 2004

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

scientific article (publication date: 21 August 2010)

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

Allie: a database and a search service of abbreviations and long forms

scientific article (publication date: 2011)

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

Application of a new probabilistic model for recognizing complex patterns in glycans

scientific article published in August 2004

Efficient tree-matching methods for accurate carbohydrate database queries.

scientific article published in January 2003

Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

scientific article (publication date: 13 March 2013)

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

scientific article (publication date: 2014)

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees

article published in 2004

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model

scientific article

YummyData: providing high-quality open life science data

scientific article

The health care and life sciences community profile for dataset descriptions

article published in 2016

Discriminative application of string similarity methods to chemical and non-chemical names for biomedical abbreviation clustering

scientific article

Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases

Semantic Web technologies for the big data in life sciences

scientific article

Natural Language Query Processing for Life Science Knowledge

Split4Blank: Maintaining consistency while improving efficiency of loading RDF data with blank nodes

scientific article published on 04 June 2019

Finding RDF Data you need by Umaka Suite

Semantic Data Acquisition by Traversing Class–Class Relationships Over Linked Open Data

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data

scientific article published in proceedings of the iswc 2016 posters & demonstrations track

Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering

Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering

Building linked open data using approximate string matching methods and domain specific resources

An Approximation Algorithm for the Two-Layered Graph Drawing Problem

The health care and life sciences community profile for dataset descriptions

scholarly article

A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media

scientific article published on 18 June 2020

UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences

A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains

article by N. Ueda et al published August 2005 in IEEE Transactions on Knowledge and Data Engineering

The health care and life sciences community profile for dataset descriptions

Constructing Japanese MeSH term dictionaries related to the COVID-19 literature

scientific article published on 30 September 2021

List of works by Atsuko Yamaguchi

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

Allie: a database and a search service of abbreviations and long forms

The health care and life sciences community profile for dataset descriptions

Application of a new probabilistic model for recognizing complex patterns in glycans

Efficient tree-matching methods for accurate carbohydrate database queries.

Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model

YummyData: providing high-quality open life science data

The health care and life sciences community profile for dataset descriptions

Discriminative application of string similarity methods to chemical and non-chemical names for biomedical abbreviation clustering

Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases

Semantic Web technologies for the big data in life sciences

Natural Language Query Processing for Life Science Knowledge

Split4Blank: Maintaining consistency while improving efficiency of loading RDF data with blank nodes

Finding RDF Data you need by Umaka Suite

Semantic Data Acquisition by Traversing Class–Class Relationships Over Linked Open Data

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data

Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering

Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering

Building linked open data using approximate string matching methods and domain specific resources

An Approximation Algorithm for the Two-Layered Graph Drawing Problem

The health care and life sciences community profile for dataset descriptions

A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media

UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences

A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains

The health care and life sciences community profile for dataset descriptions

Constructing Japanese MeSH term dictionaries related to the COVID-19 literature

Semantic Integration of Intrinsically Disordered Proteins and Existing DBs