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List of works by Atsuko Yamaguchi

A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains

article by N. Ueda et al published August 2005 in IEEE Transactions on Knowledge and Data Engineering

A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media

scientific article published on 18 June 2020

Allie: a database and a search service of abbreviations and long forms

scientific article (publication date: 2011)

An Approximation Algorithm for the Two-Layered Graph Drawing Problem

Application of a new probabilistic model for recognizing complex patterns in glycans

scientific article published in August 2004

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

scientific article (publication date: 2014)

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

scientific article (publication date: 13 March 2013)

Building linked open data using approximate string matching methods and domain specific resources

Constructing Japanese MeSH term dictionaries related to the COVID-19 literature

scientific article published on 30 September 2021

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data

scientific article published in proceedings of the iswc 2016 posters & demonstrations track

Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering

Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering

Discriminative application of string similarity methods to chemical and non-chemical names for biomedical abbreviation clustering

scientific article

Efficient tree-matching methods for accurate carbohydrate database queries.

scientific article published in January 2003

Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases

Finding RDF Data you need by Umaka Suite ⬇️

Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees

article published in 2004

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

scientific article published on July 2004

Natural Language Query Processing for Life Science Knowledge

Semantic Data Acquisition by Traversing Class–Class Relationships Over Linked Open Data

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences

Semantic Integration of Intrinsically Disordered Proteins and Existing DBs ⬇️

Semantic Web technologies for the big data in life sciences

scientific article

Split4Blank: Maintaining consistency while improving efficiency of loading RDF data with blank nodes

scientific article published on 04 June 2019

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

scientific article (publication date: 21 August 2010)

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

article published in 2016

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model

scientific article

UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences ⬇️

YummyData: providing high-quality open life science data.

scientific article

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