List of works by Shuichi Kawashima

AAindex: Amino Acid Index Database.

scientific article published on January 1999

AAindex: amino acid index database

scientific article published on January 2000

AAindex: amino acid index database, progress report 2008

scientific article published on 12 November 2007

Alteration of gene expression in human hepatocellular carcinoma with integrated hepatitis B virus DNA.

scientific article

Autoimmune diseases and peptide variations

scientific article published on 01 January 2005

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Characterization of Genes Encoding Multi-domain Proteins in the Genome of the Filamentous Nitrogen-fixing Cyanobacterium Anabaena sp. Strain PCC 7120

article

Characterization of alpha-phosphoglucomutase isozymes from Toxoplasma gondii

scientific article published on 12 February 2010

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

scientific article

Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino' across the Japanese archipelago

scientific article published on 19 February 2018

Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation

scientific article

Comprehensive analysis and prediction of synthetic lethality using subcellular locations

scientific article published on 01 January 2005

Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

scientific article

Corrigendum: Interactive transcriptome analysis of malaria patients and infecting

scholarly article by Junya Yamagishi et al published August 2018 in Genome Research

Domain shuffling and the evolution of vertebrates

scientific article published on 14 May 2009

EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG.

scientific article published on 27 April 2007

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments

scientific article

Expanding data on cultivation media and microbial traits

Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic

scholarly article by Akiyasu C. Yoshizawa et al published 16 June 2006 in Traffic

From genomics to chemical genomics: new developments in KEGG

scientific article

Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.

scientific article published on 4 November 2008

Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG

article

Implementation of linked data in the life sciences at BioHackathon 2011

scientific article

Integrated Growth Media Database by Standardizing Ingredient Information ⬇️

Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

scientific article

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

scientific article

KEGG for linking genomes to life and the environment

scientific article

MAGEST: MAboya gene expression patterns and sequence tags

scientific article published on January 2000

Med2RDF: Semantic Biomedical Knowledge-base and APIs for the Clinical Genome Medicine ⬇️

Metabolite antigens and pathway incompatibility

scientific article published on 01 January 2006

NBDC RDF portal: a comprehensive repository for semantic data in life sciences

New amino acid indices based on residue network topology.

scientific article published in January 2007

ODB: a database of operons accumulating known operons across multiple genomes

scientific article

PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list

scientific article published on December 2014

Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.

scientific article published in March 2007

Systems biology approaches and pathway tools for investigating cardiovascular disease

scientific article published on 27 April 2009

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

scientific article (publication date: 21 August 2010)

The Data Use Ontology to streamline responsible access to human biomedical datasets

scientific article published on 10 November 2021

The KEGG databases at GenomeNet

scientific article

The KEGG resource for deciphering the genome

scientific article (publication date: 2004)

The Lethal(2)-Essential-for-Life [L(2)EFL] Gene Family Modulates Dengue Virus Infection in Aedes aegypti

scientific article published on 12 October 2020

TogoGenome/TogoStanza: modularized Semantic Web genome database

scientific article published on 01 January 2019

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags

scientific article

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

scientific article published on 22 June 2007

[Prediction of protein interaction networks based on genome information]

scientific article published on 01 December 2001

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