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List of works by Jan Pačes

A compact view of isochores in the draft human genome sequence

scientific article published in January 2002

AmtDB: a database of ancient human mitochondrial genomes

article

An approach towards experimental cDNA sequence determination of predicted genes: an example from Arabidopsis U3-55k homologues

scientific article published on September 2005

Cloning and characterization of a repetitive DNA sequence specific for Trichomonas vaginalis

scientific article published on September 1, 1992

Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.

scientific article published on 19 November 2010

Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

scientific article

Corrigendum: Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.

scientific article published on 24 September 2015

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution

scientific article

Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae).

scientific article

Distinguishing between incomplete lineage sorting and genomic introgressions: complete fixation of allospecific mitochondrial DNA in a sexually reproducing fish (Cobitis; Teleostei), despite clonal reproduction of hybrids

scientific article

Diversity, phylogeny and expression patterns of Pou and Six homeodomain transcription factors in hydrozoan jellyfish Craspedacusta sowerbyi

scientific article

Endogenous lentivirus in Malayan colugo (Galeopterus variegatus), a close relative of primates

scientific article published on 4 October 2014

Functional characterization of PaLAX1, a putative auxin permease, in heterologous plant systems.

scientific article

Genes, isochores and bands in human chromosomes 21 and 22

article

Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility.

scientific article published on 10 January 2018

HERVd: database of human endogenous retroviruses

scientific article published on January 2002

HERVd: the Human Endogenous RetroViruses Database: update

scientific article

Hidden genes in birds.

scientific article published on 18 August 2015

High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection

scientific article

Hybrid asexuality as a primary postzygotic barrier between nascent species: On the interconnection between asexuality, hybridization and speciation.

scientific article

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat

scientific article

Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17

scientific article published on 01 January 2002

LC/MS analysis and deep sequencing reveal the accurate RNA composition in the HIV-1 virion

scientific article published on 18 June 2019

LIME: a new membrane Raft-associated adaptor protein involved in CD4 and CD8 coreceptor signaling

scientific article

Lateral gene transfer and gene duplication played a key role in the evolution of Mastigamoeba balamuthi hydrogenosomes

scientific article

Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection

scientific article

Life History of the Oldest Lentivirus: Characterization of ELVgv Integrations in the Dermopteran Genome.

scientific article

Long-term reinfection of the human genome by endogenous retroviruses

scientific article

NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi.

scientific article published on 15 April 2013

New insight into transcription of human endogenous retroviral elements ⬇️

scientific article published on November 29, 2012

No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets

scientific article published on 06 July 2020

PRR7 is a transmembrane adaptor protein expressed in activated T cells involved in regulation of T cell receptor signaling and apoptosis

scientific article

Plants Rather than Mineral Fertilization Shape Microbial Community Structure and Functional Potential in Legacy Contaminated Soil

scientific article published on 24 June 2016

Preferential integration of human immunodeficiency virus type 1 into genes, cytogenetic R bands and GC-rich DNA regions: insight from the human genome sequence

scientific article published in April 2002

Proceedings of the Frontiers of Retrovirology Conference 2016.

scientific article published on 26 September 2016

Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution

scientific article

Remnants of an Ancient Deltaretrovirus in the Genomes of Horseshoe Bats (Rhinolophidae).

scientific article

Representing GC variation along eukaryotic chromosomes

scientific article

Retroposition of processed pseudogenes: the impact of RNA stability and translational control

scientific article

Scrimer: designing primers from transcriptome data.

scientific article

Smooth muscle actin-expressing stromal fibroblasts in head and neck squamous cell carcinoma: Increased expression of galectin-1 and induction of poor prognosis factors

scientific article published on 09 April 2012

The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids

scientific article published on 01 September 2019

Upregulation of IL-6, IL-8 and CXCL-1 production in dermal fibroblasts by normal/malignant epithelial cells in vitro: Immunohistochemical and transcriptomic analyses.

scientific article

WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences

scientific article

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