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List of works by Nadine Peyrieras

3-D zebrafish embryo image filtering by nonlinear partial differential equations.

scientific article published in January 2007

3D early embryogenesis image filtering by nonlinear partial differential equations.

scientific article

3D+t morphological processing: applications to embryogenesis image analysis.

scientific article

A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation

scientific article

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis

scientific article

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

scientific article

Amphioxus spawning behavior in an artificial seawater facility

scientific article

An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis.

scientific article

An integrated modelling framework from cells to organism based on a cohort of digital embryos

scientific article

Animal Morphogenesis

Assembling models of embryo development: image analysis and the construction of digital atlases

scientific article published on June 2012

Automated processing of zebrafish imaging data: a survey

scientific article (publication date: September 2013)

Biocompatible photoresistant far-red emitting, fluorescent polymer probes, with near-infrared two-photon absorption, for living cell and zebrafish embryo imaging

scientific article published on 17 January 2015

Can voronoi diagram model cell geometries in early sea-urchin embryogenesis?

Cell Lineage Tree Reconstruction from Time Series of 3D Images of Zebrafish Embryogenesis

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

scientific article published in August 2010

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements

scientific article

Cells segmentation from 3-D confocal images of early zebrafish embryogenesis

scientific article published on 6 October 2009

Cells tracking in a live zebrafish embryo

scientific article

Combined third-harmonic generation and four-wave mixing microscopy of tissues and embryos

scientific article published on 26 September 2011

Combining sea urchin embryo cell lineages by error-tolerant graph matching

scientific article

Comparison of distribution and activity of nanoparticles with short interfering DNA (Dbait) in various living systems

scientific article (publication date: October 2011)

Computational Modeling and Simulation of Animal Early Embryogenesis with the MecaGen Platform

Control of the proportion of inner cells by asymmetric divisions and the ensuing resilience of cloned rabbit embryos.

scientific article published on 22 March 2018

Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula.

scientific article published in January 2002

Cytokinetic abscission is part of the midblastula transition in early zebrafish embryogenesis

scientific article published on 09 April 2021

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

scientific article

Expression of fluorescent proteins in Branchiostoma lanceolatum by mRNA injection into unfertilized oocytes

scientific article

Extraction of the Intercellular Skeleton from 2D Images of Embryogenesis Using Eikonal Equation and Advective Subjective Surface Method

Fluorescent Polymer Nanoparticles for Cell Barcoding In Vitro and In Vivo

scientific article published on 09 August 2017

Fluorescent Protein-photoprotein Fusions and Their Applications in Calcium Imaging

scientific article published on 7 December 2016

Global Strategy of Active Machine Learning for Complex Systems: Embryogenesis Application on Cell Division Detection

scholarly article published 2010

Glycosylation of gamma-glutamyltransferase is modified by ethanol in H5-6 hepatoma cell line.

scientific article published on February 1994

Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain

scientific article

Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system.

scientific article

Image analysis for understanding embryo development: a bridge from microscopy to biological insights.

scientific article published on 03 September 2011

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos.

scientific article published on January 2011

Inhibited gastrulation in mouse embryos overexpressing the leukemia inhibitory factor ⬇️

scientific article published on September 1, 1992

Inhibitory signalling to the Arp2/3 complex steers cell migration

scientific article

Maternal induction of ventral fate by zebrafish radar

scholarly article

Mechano-sensory organ regeneration in adults: The zebrafish lateral line as a model

scientific article published on 01 September 2006

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy

scientific article published in December 2011

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation

scientific article

Nodal and Fgf pathways interact through a positive regulatory loop and synergize to maintain mesodermal cell populations

scientific article published on 7 January 2004

Nonlinear PDE based numerical methods for cell tracking in zebrafish embryogenesis

Numerical algorithm for tracking cell dynamics in 4D biomedical images

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging

Regulation of nodal signalling and mesendoderm formation by TARAM-A, a TGFbeta-related type I receptor

scientific article published in January 2002

Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis

scientific article

Segmentation and analysis of 3D zebrafish cell image data

Segmentation of 3D cell membrane images by PDE methods and its applications.

scientific article published on 15 April 2011

Segmentation of cells from 3-D confocal images of live zebrafish embryo.

scientific article published in January 2007

Spatio-temporal filtering with morphological operators for robust cell migration estimation in ”in-vivo” images

The Bcl-2 homolog Nrz inhibits binding of IP3 to its receptor to control calcium signaling during zebrafish epiboly.

scientific article published on 11 February 2014

The Nonlinear Tensor Diffusion in Segmentation of Meaningful Biological Structures from Image Sequences of Zebrafish Embryogenesis

The study of lysogeny at the Pasteur Institute (1950–1960): an epistemologically open system

Towards 3D in silico modeling of the sea urchin embryonic development

scientific article

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification.

scientific article

Twister Segment Morphological Filtering. A New Method for Live Zebrafish Embryos Confocal Images Processing

scholarly article published 2007

Wavelet-based image fusion in multi-view three-dimensional microscopy

scientific article

Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis

scientific article published on 6 November 2013

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