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List of works by Aziz A. Aboobaker

A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology

scientific article

A lack of commitment for over 500 million years: conserved animal stem cell pluripotency.

scientific article published on 4 May 2012

ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics

scientific article published on 08 April 2021

Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing.

scientific article published on 4 August 2012

Characterisation of the horse transcriptome from immunologically active tissues

scientific article

Combining classical and molecular approaches elaborates on the complexity of mechanisms underpinning anterior regeneration

scientific article (publication date: 2011)

Comparative genomic analysis of innate immunity reveals novel and conserved components in crustacean food crop species.

scientific article

Conservation of epigenetic regulation by the MLL3/4 tumour suppressor in planarian pluripotent stem cells

scientific article published in Nature Communications

Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach.

scientific article published on January 2012

Diverse miRNA spatial expression patterns suggest important roles in homeostasis and regeneration in planarians.

scientific article published in January 2009

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

scientific article

Early planarian brain regeneration is independent of blastema polarity mediated by the Wnt/β-catenin pathway.

scientific article published on 20 July 2011

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano

scientific article published on 14 December 2017

Epigenetic analyses of planarian stem cells demonstrate conservation of bivalent histone modifications in animal stem cells

scientific article published on 24 August 2018

Epithelial-mesenchymal transition transcription factors control pluripotent adult stem cell migration in vivo in planarians.

scientific article published on 11 September 2017

Evidence for a microRNA expansion in the bilaterian ancestor

scientific article

FACS analysis of the planarian stem cell compartment as a tool to understand regenerative mechanisms

scientific article published on 01 January 2012

Feedback control in planarian stem cell systems.

scientific article published on 13 February 2016

Fine mapping of the pond snail left-right asymmetry (chirality) locus using RAD-Seq and fibre-FISH.

scientific article

Genes involved in the induction of liver growth by peroxisome proliferators

article

Gtdap-1 and the role of autophagy during planarian regeneration and starvation.

scientific article

High through-put sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies.

scientific article published on 20 March 2012

Hox gene evolution in nematodes: novelty conserved

scientific article published on December 2003

Identification of putative enhancer-like elements predicts regulatory networks active in planarian adult stem cells

scientific article published in 2022

JNK signalling is necessary for a Wnt- and stem cell-dependent regeneration programme.

scientific article

Learning impairments induced by glutamate blockade using dizocilpine (MK-801) in monkeys.

scientific article

Medical significance of Caenorhabditis elegans.

scientific article published in February 2000

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

scientific article

Non-canonical aging model systems and why we need them.

scientific article published on 20 March 2017

PBX/extradenticle is required to re-establish axial structures and polarity during planarian regeneration.

scientific article published on 14 January 2013

Planarian stem cells: a simple paradigm for regeneration.

scientific article

SMG-1 and mTORC1 act antagonistically to regulate response to injury and growth in planarians

scientific article

The CCR4-NOT complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation

scientific article (publication date: 2013)

The TALE class homeobox gene Smed-prep defines the anterior compartment for head regeneration

scientific article (publication date: April 2010)

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion

scientific article

The genome of the tardigrade Hypsibius dujardini

scientific article

The miR-30 microRNA family targets smoothened to regulate hedgehog signalling in zebrafish early muscle development.

scientific article

The nematode story: Hox gene loss and rapid evolution.

scientific article published on January 2010

The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios.

scientific article

The protein subunit of telomerase displays patterns of dynamic evolution and conservation across different metazoan taxa.

scientific article

Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing

scientific article

What is it about 'eye of newt'?

scientific article published on 20 February 2013

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