List of works - Koji Kadota

A normalization strategy for comparing tag count data

scientific article

A weighted average difference method for detecting differentially expressed genes from microarray data

scientific article

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data

scientific article published on 08 July 2019

Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data.

scientific article published on 17 July 2009

Bezafibrate induces plasminogen activator inhibitor-1 gene expression in a CLOCK-dependent circadian manner.

scientific article published on 16 April 2010

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins.

scientific article

Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption

scientific article published on 25 October 2009

Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma

scientific article published on 01 February 2004

Clock mutation affects circadian regulation of circulating blood cells.

scientific article

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

scientific article published on 20 January 2017

Continuous exposure to a novel stressor based on water aversion induces abnormal circadian locomotor rhythms and sleep-wake cycles in mice

scientific article

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

scientific article

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

scientific article

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

scientific article

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data

scientific article

Gene discovery in genetically labeled single dopaminergic neurons of the retina

scholarly article

Gene expression profile of hyperoxic and hypoxic retinas in a mouse model of oxygen-induced retinopathy.

scientific article published on 10 March 2010

Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.

scientific article

Genome-wide expression analysis reveals 100 adrenal gland-dependent circadian genes in the mouse liver

scientific article published on 01 January 2005

Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method

scientific article

Impact of denervation-induced muscle atrophy on housekeeping gene expression in mice.

scientific article

Ketogenic diet disrupts the circadian clock and increases hypofibrinolytic risk by inducing expression of plasminogen activator inhibitor-1.

scientific article

Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome ⬇️

scientific article published on September 29, 2010

ROKU: a novel method for identification of tissue-specific genes

scientific article published on 12 June 2006

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

scientific article

Rhinoceros beetle horn development reveals deep parallels with dung beetles

article

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results.

scientific article published in March 2018

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

scientific article published on 13 March 2019

TCC: an R package for comparing tag count data with robust normalization strategies

scientific article

The silkworm W chromosome is a source of female-enriched piRNAs.

scientific article published on 21 October 2011

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.

scientific article

List of works by Koji Kadota

A normalization strategy for comparing tag count data

A weighted average difference method for detecting differentially expressed genes from microarray data

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data

Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data.

Bezafibrate induces plasminogen activator inhibitor-1 gene expression in a CLOCK-dependent circadian manner.

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins.

Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption

Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma

Clock mutation affects circadian regulation of circulating blood cells.

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Continuous exposure to a novel stressor based on water aversion induces abnormal circadian locomotor rhythms and sleep-wake cycles in mice

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data

Gene discovery in genetically labeled single dopaminergic neurons of the retina

Gene expression profile of hyperoxic and hypoxic retinas in a mouse model of oxygen-induced retinopathy.

Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.

Genome-wide expression analysis reveals 100 adrenal gland-dependent circadian genes in the mouse liver

Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method

Impact of denervation-induced muscle atrophy on housekeeping gene expression in mice.

Ketogenic diet disrupts the circadian clock and increases hypofibrinolytic risk by inducing expression of plasminogen activator inhibitor-1.

Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome ⬇️

ROKU: a novel method for identification of tissue-specific genes

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Rhinoceros beetle horn development reveals deep parallels with dung beetles

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results.

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

TCC: an R package for comparing tag count data with robust normalization strategies

The silkworm W chromosome is a source of female-enriched piRNAs.

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.