List of works - Koji Kadota

TCC: an R package for comparing tag count data with robust normalization strategies

scientific article

A weighted average difference method for detecting differentially expressed genes from microarray data

scientific article

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

scientific article

Genome-wide expression analysis reveals 100 adrenal gland-dependent circadian genes in the mouse liver

scientific article published on 01 January 2005

Gene discovery in genetically labeled single dopaminergic neurons of the retina

scholarly article

ROKU: a novel method for identification of tissue-specific genes

scientific article published on 12 June 2006

A normalization strategy for comparing tag count data

scientific article

Clock mutation affects circadian regulation of circulating blood cells.

scientific article

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

scientific article

Gene expression profile of hyperoxic and hypoxic retinas in a mouse model of oxygen-induced retinopathy.

scientific article published on 10 March 2010

The silkworm W chromosome is a source of female-enriched piRNAs.

scientific article published on 21 October 2011

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.

scientific article

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

scientific article

Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome

scientific article published on September 29, 2010

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

scientific article

Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma

scientific article published on 01 February 2004

Impact of denervation-induced muscle atrophy on housekeeping gene expression in mice.

scientific article

Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data.

scientific article published on 17 July 2009

Ketogenic diet disrupts the circadian clock and increases hypofibrinolytic risk by inducing expression of plasminogen activator inhibitor-1.

scientific article

Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption

scientific article published on 25 October 2009

Rhinoceros beetle horn development reveals deep parallels with dung beetles

article

Continuous exposure to a novel stressor based on water aversion induces abnormal circadian locomotor rhythms and sleep-wake cycles in mice

scientific article

Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.

scientific article

Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method

scientific article

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data

scientific article

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

scientific article published on 13 March 2019

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

scientific article published on 20 January 2017

Bezafibrate induces plasminogen activator inhibitor-1 gene expression in a CLOCK-dependent circadian manner.

scientific article published on 16 April 2010

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results.

scientific article published in March 2018

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins.

scientific article

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data

scientific article published on 08 July 2019

List of works by Koji Kadota

TCC: an R package for comparing tag count data with robust normalization strategies

A weighted average difference method for detecting differentially expressed genes from microarray data

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Genome-wide expression analysis reveals 100 adrenal gland-dependent circadian genes in the mouse liver

Gene discovery in genetically labeled single dopaminergic neurons of the retina

ROKU: a novel method for identification of tissue-specific genes

A normalization strategy for comparing tag count data

Clock mutation affects circadian regulation of circulating blood cells.

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

Gene expression profile of hyperoxic and hypoxic retinas in a mouse model of oxygen-induced retinopathy.

The silkworm W chromosome is a source of female-enriched piRNAs.

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma

Impact of denervation-induced muscle atrophy on housekeeping gene expression in mice.

Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data.

Ketogenic diet disrupts the circadian clock and increases hypofibrinolytic risk by inducing expression of plasminogen activator inhibitor-1.

Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption

Rhinoceros beetle horn development reveals deep parallels with dung beetles

Continuous exposure to a novel stressor based on water aversion induces abnormal circadian locomotor rhythms and sleep-wake cycles in mice

Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.

Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Bezafibrate induces plasminogen activator inhibitor-1 gene expression in a CLOCK-dependent circadian manner.

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results.

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins.

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data