List of works - Florian P Breitwieser

A Comprehensive Analysis of the Dynamic Response to Aphidicolin-Mediated Replication Stress Uncovers Targets for ATM and ATMIN.

scientific article

A chemical biology approach identifies AMPK as a modulator of melanoma oncogene MITF.

scientific article published on 3 June 2013

A comparative proteomic study of human skin suction blister fluid from healthy individuals using immunodepletion and iTRAQ labeling

scientific article published on 31 May 2012

A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib

scientific article

A review of methods and databases for metagenomic classification and assembly.

scientific article

Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography.

scientific article published in October 2009

Building and exploring an integrated human kinase network: global organization and medical entry points.

scientific article

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.

scientific article

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

article

CMPK2 and BCL-G are associated with type 1 interferon-induced HIV restriction in humans

article

Centrifuge: rapid and sensitive classification of metagenomic sequences

scientific article published on 17 October 2016

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

scientific article published on 06 May 2014

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

scientific article published on 27 August 2018

General statistical modeling of data from protein relative expression isobaric tags.

scientific article

Germline RBBP6 mutations in familial myeloproliferative neoplasms.

scientific article published on 16 November 2015

Human contamination in bacterial genomes has created thousands of spurious proteins

scientific article published on 07 May 2019

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

scientific article

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

scientific article published in January 2018

Initial characterization of the human central proteome

scientific article

Intracellular HIV-1 RNA and CD4+ T-cell activation in patients starting antiretrovirals.

scientific article published on 29 March 2017

Isobar(PTM): a software tool for the quantitative analysis of post-translationally modified proteins

scientific article

KrakenHLL: Confident and fast metagenomics classification using unique k-mer counts

KrakenUniq: confident and fast metagenomics classification using unique k-mer counts

scientific article published on 16 November 2018

MASPECTRAS 2: An integration and analysis platform for proteomic data.

scientific article

Multiple and sequential data acquisition method: an improved method for fragmentation and detection of cross-linked peptides on a hybrid linear trap quadrupole Orbitrap Velos mass spectrometer.

scientific article

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

scientific article published on 13 June 2016

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs.

scientific article published on 6 June 2017

Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens.

scientific article published on 16 October 2010

Quantitative proteomics of aqueous and vitreous fluid from patients with idiopathic epiretinal membranes

scientific article published on 29 November 2012

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

scientific article published on 2 July 2015

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

scientific article published on 16 November 2017

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML.

scientific article

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

scientific journal article

Trait-based analysis of the human skin microbiome

scientific article published on 05 July 2019

Using iTRAQ combined with tandem affinity purification to enhance low-abundance proteins associated with somatically mutated EGFR core complexes in lung cancer.

scientific article

List of works by Florian P Breitwieser

A Comprehensive Analysis of the Dynamic Response to Aphidicolin-Mediated Replication Stress Uncovers Targets for ATM and ATMIN.

A chemical biology approach identifies AMPK as a modulator of melanoma oncogene MITF.

A comparative proteomic study of human skin suction blister fluid from healthy individuals using immunodepletion and iTRAQ labeling

A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib

A review of methods and databases for metagenomic classification and assembly.

Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography.

Building and exploring an integrated human kinase network: global organization and medical entry points.

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

CMPK2 and BCL-G are associated with type 1 interferon-induced HIV restriction in humans

Centrifuge: rapid and sensitive classification of metagenomic sequences

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

General statistical modeling of data from protein relative expression isobaric tags.

Germline RBBP6 mutations in familial myeloproliferative neoplasms.

Human contamination in bacterial genomes has created thousands of spurious proteins

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

Initial characterization of the human central proteome

Intracellular HIV-1 RNA and CD4+ T-cell activation in patients starting antiretrovirals.

Isobar(PTM): a software tool for the quantitative analysis of post-translationally modified proteins

KrakenHLL: Confident and fast metagenomics classification using unique k-mer counts

KrakenUniq: confident and fast metagenomics classification using unique k-mer counts

MASPECTRAS 2: An integration and analysis platform for proteomic data.

Multiple and sequential data acquisition method: an improved method for fragmentation and detection of cross-linked peptides on a hybrid linear trap quadrupole Orbitrap Velos mass spectrometer.

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs.

Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens.

Quantitative proteomics of aqueous and vitreous fluid from patients with idiopathic epiretinal membranes

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML.

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

Trait-based analysis of the human skin microbiome

Using iTRAQ combined with tandem affinity purification to enhance low-abundance proteins associated with somatically mutated EGFR core complexes in lung cancer.