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List of works by Daniel H. Buckley

15N2–DNA–stable isotope probing of diazotrophic methanotrophs in soil

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces

scientific article

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

scientific article published on 05 February 2014

A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase

scientific article

A global census of nitrogenase diversity

scientific article

A model for the effect of homologous recombination on microbial diversification

scientific article published on 9 November 2011

Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling.

scientific article

Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land‐use history

scientific article published in 2022

Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis

scientific article

Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov.

scientific article

Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils

scientific article published in 2022

Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils

scientific article published in 2021

Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages

scientific article published on 05 February 2016

Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP

scientific article published on 01 January 2019

Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures

scientific article published in April 2003

Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces

scientific article published on 13 February 2018

Diversity and dynamics of microbial communities in soils from agro-ecosystems

scientific article

Diversity of Planctomycetes in Soil in Relation to Soil History and Environmental Heterogeneity.

scientific article published in September 2006

Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity

scientific article

Drought legacy in rhizosphere bacterial communities alters subsequent plant performance

scientific article published in 2021

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter

scientific article published on 29 April 2016

Elevational Gradients Impose Dispersal Limitation on Streptomyces

scientific article published in 2022

Environmental Patterns Are Imposed on the Population Structure of Escherichia coli after Fecal Deposition ⬇️

scientific article published on November 12, 2010

Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment

scientific article published on 06 January 2020

Evidence for the functional significance of diazotroph community structure in soil

scientific article

Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed

scientific article

Factors governing extracellular DNA degradation dynamics in soil

scientific article published on 21 December 2018

Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing Selection

scientific article published on 19 February 2019

Free-Wilson Analysis of Comprehensive Data on Phosphoinositide-3-kinase (PI3K) Inhibitors Reveals Importance of N-Methylation for PI3Kδ Activity

scientific article published on 06 November 2019

Genome Surfing As Driver of Microbial Genomic Diversity.

scientific article published on 7 March 2017

Grappling with Proteus: population level approaches to understanding microbial diversity

scientific article

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.

scientific article published on 3 January 2018

Harvested perennial grasslands provide ecological benchmarks for agricultural sustainability

article

Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella

scientific article published on 30 June 2009

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing

scientific article published on 07 October 2014

Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin.

scientific article

Latitude delineates patterns of biogeography in terrestrial Streptomyces

scientific article published on 20 June 2016

MDM4 is a rational target for treating breast cancers with mutant p53.

scientific article published on 18 January 2017

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

scientific article

Microbial sequencing analyses suggest the presence of a fecal veneer on indoor climbing wall holds.

scientific article

Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification

scientific article

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

scientific article

Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat.

scientific article

Multicellular photo-magnetotactic bacteria.

scientific article published on 30 September 2010

No-tillage conversion of harvested perennial grassland to annual cropland reduces root biomass, decreases active carbon stocks, and impacts soil biota

Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation

scientific article published on 26 June 2015

Paraburkholderia solitsugae sp. nov. and Paraburkholderia elongata sp. nov., phenolic acid-degrading bacteria isolated from forest soil and emended description of Paraburkholderia madseniana

scientific article published in 2020

Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil

scientific article published in 2021

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa

scientific article published on 07 June 2018

Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field.

scientific article

Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field

scientific article published on 30 October 2019

Prevalent root-derived phenolics drive shifts in microbial community composition and prime decomposition in forest soil

scientific article published in 2020

Roadside ditches as conduits of fecal indicator organisms and sediment: implications for water quality management.

scientific article published on 7 August 2013

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.

scientific article published on 28 March 2018

Simulating metagenomic stable isotope probing datasets with MetaSIPSim

scientific article published on 30 January 2020

Soil characteristics and land-use drive bacterial community assembly patterns

scientific article published on 01 January 2020

Stable isotope probing with 15N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density

scientific article published on 16 March 2007

Stable isotope probing with 15N2 reveals novel noncultivated diazotrophs in soil

scientific article published on 16 March 2007

Streptomyces apricus sp. nov., isolated from soil

scholarly article published in 2022

Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies

scientific article published in 2022

T-REX: software for the processing and analysis of T-RFLP data

scientific article

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria

scientific article published on 4 September 2017

The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome

scientific article published on 13 August 2018

The RNA virome of echinoderms

The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance.

scientific article published on 7 April 2017

The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons

scientific article published on 07 December 2020

Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil

scientific article published in 2022

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

scientific article

Vertical distribution of methane metabolism in microbial mats of the Great Sippewissett Salt Marsh

scientific article

Widespread homologous recombination within and between Streptomyces species

scientific article

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