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List of works by Mircea Podar

A Complex Endomembrane System in the Archaeon Ignicoccus hospitalis Tapped by Nanoarchaeum equitans

scientific article

A UV-induced, Mg(2+)-dependent crosslink traps an active form of domain 3 of a self-splicing group II intron.

scientific article published in October 1995

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

scientific article published on 14 January 2016

A framework for human microbiome research

scientific article

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

scientific article

A korarchaeal genome reveals insights into the evolution of the Archaea

scientific article

A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes.

scientific article

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

scientific article

A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring

scientific article published on 16 August 2018

An intersubunit disulfide bridge stabilizes the tetrameric nucleoside diphosphate kinase of Aquifex aeolicus

scientific article

Biogeography of the ecosystems of the healthy human body

scientific article

Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park

scientific article

Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments.

scientific article published on 17 November 2017

Cellulases: ambiguous nonhomologous enzymes in a genomic perspective ⬇️

scientific article published on June 16, 2011

Characterization of Fatty Acids in Crenarchaeota by GC-MS and NMR.

scientific article published on 31 December 2015

Characterization of archaeal community in contaminated and uncontaminated surface stream sediments

scientific article

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park

scientific article published on 16 October 2014

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

scientific article

Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

scientific article published on 02 July 2020

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

scientific article published on 02 July 2020

Complete and draft genome sequences of six members of the Aquificales

scientific article

Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.

scientific article

Complex subsurface hydrothermal fluid mixing at a submarine arc volcano supports distinct and highly diverse microbial communities

scientific article published on 04 December 2020

Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes

scientific article

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Cultivating the Bacterial Microbiota of <i>Populus</i> Roots

scientific article published on 22 June 2021

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales

scientific article

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment

scientific article published on 15 July 2016

Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

article

Development of a Model, Metal-reducing Microbial Community for a System Biology Level Assessment of Desulfovibrio vulgaris as part of a Community

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing ⬇️

scientific article published on December 15, 2011

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

scientific article

Domain 5 binds near a highly conserved dinucleotide in the joiner linking domains 2 and 3 of a group II intron

scientific article

Draft Genome Sequence of Pyrodictium occultum PL19T, a Marine Hyperthermophilic Species of Archaea That Grows Optimally at 105°C

scientific article published on 25 February 2016

Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring.

scientific article published on 15 March 2018

Draft Genome Sequence of a Novel Thermofilum sp. Strain from a New Zealand Hot Spring Enrichment Culture

scientific article published on 22 February 2018

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7

scientific article

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

scientific article published on 15 July 2016

Environmental whole-genome amplification to access microbial populations in contaminated sediments

scientific article published in May 2006

Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments

scientific article

Exploring nitrilase sequence space for enantioselective catalysis

scientific article published in April 2004

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

scientific article

Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.

scientific article

Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132

scientific article

Genomics of the Uncultivated, Periodontitis-Associated Bacterium Tannerella sp. BU045 (Oral Taxon 808).

scientific article published in May 2018

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

scientific article published on 05 July 2016

Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.

scientific article published on 23 February 2018

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

scientific article

Group II intron splicing in vivo by first-step hydrolysis ⬇️

scientific article published on February 26, 1998

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities

scientific article

Host genetic and environmental effects on mouse intestinal microbiota.

scientific article

Hypersaline sapropels act as hotspots for microbial dark matter

scientific article published on 21 July 2017

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

scientific article

Insights into the Evolution of Host Association through the Isolation and Characterization of a Novel Human Periodontal Pathobiont, Desulfobulbus oralis

scientific article published on 13 March 2018

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.

scientific article

Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans

scientific article

Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams

scientific article

Mercury methylation by novel microorganisms from new environments

scientific article

Microbial Diversity and Sulfur Cycling in an Early Earth Analogue: From Ancient Novelty to Modern Commonality

scientific article published on 08 March 2022

Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge.

scientific article

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

scientific article published on 01 April 2018

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp

scientific article published on 20 January 2012

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

More than one way to splice an RNA: branching without a bulge and splicing without branching in group II introns.

scientific article published in October 1998

Multi-omics analysis provides insight to the Ignicoccus hospitalis-Nanoarchaeum equitans association.

scientific article published on 4 June 2017

Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity

scientific article

New opportunities revealed by biotechnological explorations of extremophiles.

scientific article

Proteomic characterization of cellular and molecular processes that enable the Nanoarchaeum equitans--Ignicoccus hospitalis relationship.

scientific article

Reactions catalyzed by group II introns in vitro

scientific article published on 01 January 1996

Regulatory elements involved in tax-mediated transactivation of the HTLV-I LTR.

scientific article published on October 1993

Rescuing Those Left Behind: Recovering and Characterizing Underdigested Membrane and Hydrophobic Proteins To Enhance Proteome Measurement Depth

scientific article

Robust Mercury Methylation across Diverse Methanogenic Archaea.

scientific article published on 10 April 2018

Sequencing intractable DNA to close microbial genomes

scientific article

Single cell genomics of uncultured, health-associated Tannerella BU063 (Oral Taxon 286) and comparison to the closely related pathogen Tannerella forsythia

scientific article

Single-Cell Genomics and the Oral Microbiome

scientific article published on 24 February 2020

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

scientific article published on 17 September 2018

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation

scientific article

Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions

scientific article published on August 1995

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

scientific article published on 19 June 2020

Structure, function and diversity of the healthy human microbiome

scientific article

Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania

scientific article

Targeted access to the genomes of low-abundance organisms in complex microbial communities.

scientific article published on 16 March 2007

Targeted isolation and cultivation of uncultivated bacteria by reverse genomics

scientific article published on 30 September 2019

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

scientific article published on 23 January 2017

The genetic basis for bacterial mercury methylation

scientific article

The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism

scientific article

The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves.

scientific article

The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system

scientific article

The stereochemical course of group II intron self-splicing.

scientific article

The two steps of group II intron self-splicing are mechanistically distinguishable.

scientific article

Toward unrestricted use of public genomic data:

scientific article

Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake

scientific article published on 15 April 2016

Untargeted metabolomics studies employing NMR and LC-MS reveal metabolic coupling between Nanoarcheum equitans and its archaeal host Ignicoccus hospitalis.

scientific article published in August 2015

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