List of works - Arlin Stoltzfus

A sequence-based model accounts largely for the relationship of intron positions to protein structural features

scientific article published on 23 July 2007

Amino acid exchangeability and the adaptive code hypothesis

scientific article published on 26 September 2007

Bias in the introduction of variation as an orienting factor in evolution

scientific article

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data

scientific article

Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution

scientific article

Community and Code: Nine Lessons from Nine NESCent Hackathons

Constructive neutral evolution: exploring evolutionary theory’s curious disconnect ⬇️

scientific article published on October 13, 2012

Evidence for a predominant role of oxidative damage in germline mutation in mammals

article

Gene identification in black cohosh (Actaea racemosa L.): expressed sequence tag profiling and genetic screening yields candidate genes for production of bioactive secondary metabolites

scientific article

Genes-in-pieces revisited

scientific article published in Nature

In search of mutation-driven evolution Nei, Masatoshi. 2013. Mutation-Driven Evolution. Oxford University Press, Oxford, 256 pp. ISBN 978-0-19-966173-2 (hardcover)

Intron “sliding” and the diversity of intron positions ⬇️

scientific article published on September 30, 1997

Knowledge Standardization in Evolutionary Biology: The Comparative Data Analysis Ontology

scholarly article published 2009

Mendelian-mutationism: the forgotten evolutionary synthesis

scientific article published in January 2014

Modeling evolution using the probability of fixation: history and implications

scientific article published on September 2014

Molecular evolution: introns fall into place

scientific article published on May 2004

Molecular evolution: recent cases of spliceosomal intron gain?

scientific article

Mutation-Biased Adaptation in a Protein NK Model

article

Mutation-biased adaptation in Andean house wrens

scientific article

Mutationism and the dual causation of evolutionary change

scientific article

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

scientific article (publication date: July 2012)

Nexplorer: phylogeny-based exploration of sequence family data

scientific article

On the Causes of Evolutionary Transition:Transversion Bias

scientific article published on 25 November 2015

On the possibility of constructive neutral evolution

scientific article (publication date: August 1999)

Origin of introns–early or late?

PhylOnt: A domain-specific ontology for phylogeny analysis

scholarly article published October 2012

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

scientific article (publication date: 13 May 2013)

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees

scientific article published on 06 April 2020

Population diversity of ORFan genes in Escherichia coli

scientific article

Response

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis

scientific article (publication date: 22 October 2012)

Slippery introns and globin gene evolution

article

The evolutionary gain of spliceosomal introns: sequence and phase preferences

scientific article published on 10 March 2004

The exchangeability of amino acids in proteins

scientific article

Why we don't want another "Synthesis".

scientific article published on 2 October 2017

List of works by Arlin Stoltzfus

A sequence-based model accounts largely for the relationship of intron positions to protein structural features

Amino acid exchangeability and the adaptive code hypothesis

Bias in the introduction of variation as an orienting factor in evolution

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data

Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution

Community and Code: Nine Lessons from Nine NESCent Hackathons

Constructive neutral evolution: exploring evolutionary theory’s curious disconnect ⬇️

Evidence for a predominant role of oxidative damage in germline mutation in mammals

Gene identification in black cohosh (Actaea racemosa L.): expressed sequence tag profiling and genetic screening yields candidate genes for production of bioactive secondary metabolites

Genes-in-pieces revisited

In search of mutation-driven evolution Nei, Masatoshi. 2013. Mutation-Driven Evolution. Oxford University Press, Oxford, 256 pp. ISBN 978-0-19-966173-2 (hardcover)

Intron “sliding” and the diversity of intron positions ⬇️

Knowledge Standardization in Evolutionary Biology: The Comparative Data Analysis Ontology

Mendelian-mutationism: the forgotten evolutionary synthesis

Modeling evolution using the probability of fixation: history and implications

Molecular evolution: introns fall into place

Molecular evolution: recent cases of spliceosomal intron gain?

Mutation-Biased Adaptation in a Protein NK Model

Mutation-biased adaptation in Andean house wrens

Mutationism and the dual causation of evolutionary change

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

Nexplorer: phylogeny-based exploration of sequence family data

On the Causes of Evolutionary Transition:Transversion Bias

On the possibility of constructive neutral evolution

Origin of introns–early or late?

PhylOnt: A domain-specific ontology for phylogeny analysis

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees

Population diversity of ORFan genes in Escherichia coli

Response

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis

Slippery introns and globin gene evolution

The evolutionary gain of spliceosomal introns: sequence and phase preferences

The exchangeability of amino acids in proteins

Why we don't want another "Synthesis".