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List of works by Eivind Almaas

A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.

scientific article

Alginate Biosynthesis Factories in Pseudomonas fluorescens: Localization and Correlation with Alginate Production Level.

scientific article published on 11 December 2015

Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks

article

Automated generation of genome-scale metabolic draft reconstructions based on KEGG

scholarly article by Emil Karlsen published in December 2018

Biological impacts and context of network theory

scientific article published on May 2007

Comparative analysis of weighted gene co-expression networks in human and mouse

scientific article

Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets

scientific article (publication date: June 2009)

Complex network analysis in microbial systems: theory and examples

scientific article published on January 2012

Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain

scientific article

Do genome-scale models need exact solvers or clearer standards?

scientific article published on 14 October 2015

Dynamics of information access on the web

scientific article

ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models

scientific article published on 01 March 2020

Evolutionary cores of domain co-occurrence networks

scientific article

Exact results and scaling properties of small-world networks

scientific article published on 01 April 2000

GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients

scientific article published on 06 November 2019

Genetic noise control via protein oligomerization

scientific article

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach

scientific article

Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001.

scientific article published on 26 January 2009

Global organization of metabolic fluxes in the bacterium Escherichia coli

scientific article (publication date: 26 February 2004)

Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability

scientific article

Identifying dynamic network modules with temporal and spatial constraints

scientific article published in January 2009

ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions

Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.

scientific article

Optimal flux patterns in cellular metabolic networks

scientific article published in June 2007

Peeling the yeast protein network

scientific article

Population-specific renal proteomes of marine and freshwater three-spined sticklebacks

scientific article published on 10 October 2015

Predicting Strain Engineering Strategies Using iKS1317: A Genome-Scale Metabolic Model of Streptomyces coelicolor

scientific article published on 16 January 2019

Predicting synthetic rescues in metabolic networks

scientific article

Predictive evolution of metabolic phenotypes using model‐designed environments

scientific article published in 2022

Robust Analysis of Fluxes in Genome-Scale Metabolic Pathways

scientific article

Scaling properties of random walks on small-world networks

scientific article published on 05 November 2003

Statistics of weighted treelike networks

scientific article published on 21 March 2005

Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.

scientific article

Systems biology of microbial communities

scientific article published in January 2009

The activity reaction core and plasticity of metabolic networks

scientific article

The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.

scientific article published on 31 May 2018

Two-component genetic switch as a synthetic module with tunable stability.

scientific article published on 6 July 2009

Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA)

scientific article published on 15 October 2020

csdR, an R package for differential co-expression analysis

scientific article published in 2022

s-core network decomposition: a generalization of k-core analysis to weighted networks

scientific article published on 30 December 2013

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool

scholarly article by Deisy Morselli Gysi published in October 2018

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