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List of works by Arno Velds

A genome-wide RNAi screen in mouse embryonic stem cells identifies Mp1 as a key mediator of differentiation.

scientific article published on 5 December 2011

A genomic and functional inventory of deubiquitinating enzymes

scientific article

A large-scale RNAi screen in human cells identifies new components of the p53 pathway

scientific article

A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization

scientific article published in January 2004

An shRNA barcode screen provides insight into cancer cell vulnerability to MDM2 inhibitors

scientific article published on 13 February 2006

BRCA-deficient mouse mammary tumor organoids to study cancer-drug resistance

scientific article

BRCA1-like profile predicts benefit of tandem high dose epirubicin-cyclophospamide-thiotepa in high risk breast cancer patients randomized in the WSG-AM01 trial

scientific article published on 4 March 2016

CopywriteR: DNA copy number detection from off-target sequence data

scientific article

Corrigendum: High-throughput epitope discovery reveals frequent recognition of neo-antigens by CD4+ T cells in human melanoma

scientific article published on 01 October 2016

Cross-species comparison of aCGH data from mouse and human BRCA1- and BRCA2-mutated breast cancers

scientific article

Defining chromosomal translocation risks in cancer.

scientific article published on 14 June 2016

Differential Programming of B Cells in AID Deficient Mice ⬇️

scientific article published on July 29, 2013

Direct screening for chromatin status on DNA barcodes in yeast delineates the regulome of H3K79 methylation by Dot1

scientific article (publication date: 6 December 2016)

Dosage-dependent tumor suppression by histone deacetylases 1 and 2 through regulation of c-Myc collaborating genes and p53 function

scientific article

Drug-induced histone eviction from open chromatin contributes to the chemotherapeutic effects of doxorubicin

scientific article

ERBB2 Mutations Characterize a Subgroup of Muscle-invasive Bladder Cancers with Excellent Response to Neoadjuvant Chemotherapy

scientific article published on 27 January 2015

Fanconi anemia and homologous recombination gene variants are associated with functional DNA repair defects in vitro and poor outcome in patients with advanced head and neck squamous cell carcinoma.

scientific article published on 6 April 2018

Gene expression profiling in follicular lymphoma to assess clinical aggressiveness and to guide the choice of treatment

scientific article published on 2 September 2004

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania

scientific article

Hallmarks of aromatase inhibitor drug resistance revealed by epigenetic profiling in breast cancer.

scientific article published in November 2013

Heterogeneous differentiation patterns of individual CD8+ T cells.

scientific article published on 14 March 2013

High-throughput epitope discovery reveals frequent recognition of neo-antigens by CD4+ T cells in human melanoma

scientific article published on 22 December 2014

High-throughput identification of antigen-specific TCRs by TCR gene capture

scientific article

Identification of differentially expressed genes in mouse kidney after irradiation using microarray analysis.

scientific article published on January 2004

KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data.

scientific article

Mps1 inhibitors synergise with low doses of taxanes in promoting tumour cell death by enhancement of errors in cell division

scientific article

Reassessing genomic targeting of AID

scientific article published on 01 September 2012

Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells.

scientific article

Robust BRCA1-like classification of copy number profiles of samples repeated across different datasets and platforms

scientific article published on 20 March 2015

Somatic loss of BRCA1 and p53 in mice induces mammary tumors with features of human BRCA1-mutated basal-like breast cancer

scholarly article

The T7-primer is a source of experimental bias and introduces variability between microarray platforms

scientific article

Transcription Factor NFIB Is a Driver of Small Cell Lung Cancer Progression in Mice and Marks Metastatic Disease in Patients

scientific article published on 29 June 2016

Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

scientific article published on 16 September 2013

Volatile anesthetics modulate gene expression in breast and brain tumor cells.

scientific article published on October 2010

XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

scholarly article by Roelof J C Kluin published in October 2018

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