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List of works by Erik Winfree

A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits

article by Lulu Qian & Erik Winfree published 2009 in Lecture Notes in Computer Science

A cargo-sorting DNA robot

scientific article published in September 2017

A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures

scientific article published on 03 June 2020

A simple DNA gate motif for synthesizing large-scale circuits

scientific article

A sticker-based model for DNA computation

scientific article published on January 1998

Active self-assembly of algorithmic shapes and patterns in polylogarithmic time

Algorithmic Self-Assembly of DNA

Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments

scientific article

Algorithmic self-assembly of DNA Sierpinski triangles

scientific article

An autonomous polymerization motor powered by DNA hybridization

article

An information-bearing seed for nucleating algorithmic self-assembly

scholarly article

Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems

scientific article published on 01 December 2018

Catalyzed relaxation of a metastable DNA fuel

scientific article published on September 2006

Combining self-healing and proofreading in self-assembly

Complexity of Compact Proofreading for Self-assembled Patterns

Complexity of Self‐Assembled Shapes

Computation with finite stochastic chemical reaction networks

article by David Soloveichik et al published 2 February 2008 in Natural Computing

Construction of an in vitro bistable circuit from synthetic transcriptional switches

scientific article

Construction, Analysis, Ligation, and Self-Assembly of DNA Triple Crossover Complexes

article

Control of DNA strand displacement kinetics using toehold exchange.

scientific article published in December 2009

Correction to “Design and Characterization of Programmable DNA Nanotubes”

scholarly article published in Journal of the American Chemical Society

DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly

DNA as a Universal Substrate for Chemical Kinetics

DNA as a universal substrate for chemical kinetics

scientific article

Design and characterization of programmable DNA nanotubes

scientific article

Design and self-assembly of two-dimensional DNA crystals

scientific article

Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics

scientific article published on 26 October 2015

Direct atomic force microscopy observation of DNA tile crystal growth at the single-molecule level

scientific article

Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator.

scientific article published on 16 February 2014

Dynamic allosteric control of noncovalent DNA catalysis reactions.

scientific article

Efficient Turing-Universal Computation with DNA Polymers

Engineering entropy-driven reactions and networks catalyzed by DNA.

scientific article published in November 2007

Ensemble Bayesian analysis of bistability in a synthetic transcriptional switch

scientific article published on 26 June 2012

Enzyme-free nucleic acid dynamical systems.

scientific article published in December 2017

Enzyme-free nucleic acid logic circuits

scientific article

Erratum to “The computational power of Benenson automata” [Theoret. Comput. Sci. 344 (2005) 279–297]

scholarly article published in Theoretical Computer Science

Error suppression mechanisms for DNA tile self-assembly and their simulation

How crystals that sense and respond to their environments could evolve

Increasing Redundancy Exponentially Reduces Error Rates during Algorithmic Self-Assembly

scientific article

Integrating DNA strand-displacement circuitry with DNA tile self-assembly

scientific article

Molecular robots guided by prescriptive landscapes

scientific article

Neural Network Computation by In Vitro Transcriptional Circuits ⬇️

scientific article published in January 2005

Neural network computation with DNA strand displacement cascades

scientific article

On applying molecular computation to the data encryption standard

scientific article

On the biophysics and kinetics of toehold-mediated DNA strand displacement

scientific article published on 09 September 2013

On the reduction of errors in DNA computation

scientific article published on January 1999

Paradigms for computational nucleic acid design

scientific article

Physical principles for DNA tile self-assembly

scientific article published on 10 May 2017

Programmability of Chemical Reaction Networks

Programming and simulating chemical reaction networks on a surface

scientific article published on 27 May 2020

Protein design is NP-hard

scientific article

Reducing facet nucleation during algorithmic self-assembly

scientific article

Robust self-replication of combinatorial information via crystal growth and scission

scientific article published on 9 April 2012

Robustness and modularity properties of a non-covalent DNA catalytic reaction

scientific article

Scaling up digital circuit computation with DNA strand displacement cascades

scientific article

Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates

scientific article

Self-replication and Evolution of DNA Crystals

Simple Evolution of Complex Crystal Species

Simple evolution of complex crystal species

Synthesis of crystals with a programmable kinetic barrier to nucleation

scholarly article

Synthetic in vitro transcriptional oscillators

scientific article published on February 2011

The computational power of Benenson automata

article published in 2005

Thermodynamic Analysis of Interacting Nucleic Acid Strands

article

Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements

scientific article published on 20 February 2015

Timing molecular motion and production with a synthetic transcriptional clock

scientific article

Toward Reliable Algorithmic Self-Assembly of DNA Tiles: A Fixed-Width Cellular Automaton Pattern

Toward molecular programming with DNA

Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern.

scientific article published on 28 December 2007

Two Dimensions and Two States in DNA Nanotechnology

scientific article published on 01 January 2000

Two computational primitives for algorithmic self-assembly: copying and counting

scientific article

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