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List of works by Erik Bongcam-Rudloff

2013 Annual General Meeting: Executive Board Report

2014 Annual General Meeting – Executive Board Report

A 1.8kb GFAP-promoter fragment is active in specific regions of the embryonic CNS.

scientific article published in September 2001

A DNA sequence directed mutual transcription regulation of HSF1 and NFIX involves novel heat sensitive protein interactions

scientific article

A community standard format for the representation of protein affinity reagents

scientific article

A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs

scientific article

Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.

scientific article

Best practices in bioinformatics training for life scientists

scientific article published on 25 June 2013

BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences

scientific article

Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics

scientific article

Camel Streptococcus agalactiae populations are associated with specific disease complexes and acquired the tetracycline resistance gene tetM via a Tn916-like element

scientific article published on October 2013

Cell scattering and migration induced by autocrine transforming growth factor alpha in human glioma cells in vitro

scientific article

Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB).

scientific article published on 12 October 2016

Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel

scientific article published on 20 November 2015

Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033.

scientific article

Comprehensive human urine standards for comparability and standardization in clinical proteome analysis

scientific article

Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)

scientific article published on February 2013

Contributions of the EMERALD project to assessing and improving microarray data quality

scientific article

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 14 May 2015

Data integration in the era of omics: current and future challenges

scientific article

Differential gene expression in bovine endometrial epithelial cells after challenge with LPS; specific implications for genes involved in embryo maternal interactions

scientific article published on 05 September 2019

Draft Genome Sequence of Clostridium ultunense Strain Esp, a Syntrophic Acetate-Oxidizing Bacterium ⬇️

scientific article published on March 28, 2013

Draft genome sequence of 'Treponema phagedenis' strain V1, isolated from bovine digital dermatitis

scientific article

Dynamics of insertion sequence element IS629 inactivation of verotoxin 2 genes in Escherichia coli O157:H7.

scientific article published on 11 April 2017

EMBnet - the European Molecular Biology Network, Moving forward: 2010 & beyond

scholarly article by Terri Attwood published in July 2010

EVALLER: a web server for in silico assessment of potential protein allergenicity

scientific article

Effects of inducible glial fibrillary acidic protein on glioma cell motility and proliferation.

scientific article published in April 2000

Establishment of a European Network for Urine and Kidney Proteomics

Experiences with workflows for automating data-intensive bioinformatics

scientific article

Expression of recombinant platelet-derived growth factor A- and B-chain homodimers in rat-1 cells and human fibroblasts reveals differences in protein processing and autocrine effects ⬇️

scientific article published on July 1, 1988

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

scientific article

First Genome Sequence of a Syntrophic Acetate-Oxidizing Bacterium, Tepidanaerobacter acetatoxydans Strain Re1.

scientific article published on January 2013

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 9 April 2015

Genetic analysis of a Treponema phagedenis locus encoding antigenic lipoproteins with potential for antigenic variation

scientific article published on 6 May 2016

Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036 ⬇️

scientific article published on March 21, 2013

Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius

scientific article published on 18 July 2013

Genome analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: a rhizobacterium that improves plant growth and stress management

scientific article

Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii

scientific article

Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria.

scientific article

Genome-guided analysis of physiological capacities of Tepidanaerobacter acetatoxydans provides insights into environmental adaptations and syntrophic acetate oxidation

scientific article

Genomic comparison of Escherichia coli serotype O103:H2 isolates with and without verotoxin genes: implications for risk assessment of strains commonly found in ruminant reservoirs

scientific article published on 16 February 2016

Human glial fibrillary acidic protein: complementary DNA cloning, chromosome localization, and messenger RNA expression in human glioma cell lines of various phenotypes ⬇️

scientific article published on March 1, 1991

ISCB Africa ASBCB Conference on Bioinformatics and eBioKit Workshop

article

Implementation of proteomic biomarkers: making it work

scientific article

In silico analysis of the dog genome identifies Canine Endogenous Retroviruses (CfERVs).

scientific article published on 24 September 2009

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

scientific article (publication date: 2014)

Menin's interaction with glial fibrillary acidic protein and vimentin suggests a role for the intermediate filament network in regulating menin activity

scientific article (publication date: 15 August 2002)

MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies

scientific article

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)

scientific article published on 09 February 2021

Modulation of phenotype and induction of irregular vessels accompany high tumorigenic potential of clonal human glioma cells xenografted to nude-rat brain.

scientific article published in March 2000

Molecular typing of Escherichia coli O157:H7 isolates from Swedish cattle and human cases: population dynamics and virulence

scientific article

Mosaic structure of intragenic repetitive elements in histone H1-like protein Hc2 varies within serovars of Chlamydia trachomatis

scientific article

NOTCH3 and CADASIL syndrome: a genetic and structural overview.

scientific article

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

scientific article

PDGF induces reorganization of vimentin filaments

scientific article published in July 1998

Recommendations for biomarker identification and qualification in clinical proteomics

scientific article published in August 2010

Recommendations on e-infrastructures for next-generation sequencing

scientific article

Relationship between genome and epigenome--challenges and requirements for future research

scientific article published on 18 June 2014

Report of the EMBnet AGM 2010 Workshop

Report of the EMBnet AGM 2011 Workshop

SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network

SNP and Structural Study of the Notch Superfamily Provides Insights and Novel Pharmacological Targets against the CADASIL Syndrome and Neurodegenerative Diseases

scientific article published in 2024

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe

scientific article

Studies of plant colonisation by closely related Bacillus amyloliquefaciens biocontrol agents using strain specific quantitative PCR assays

scientific article published on 8 October 2014

Suppression of platelet-derived growth factor alpha- and beta-receptor mRNA levels in human fibroblasts by SV40 T/t antigen

scientific article

Targeted resequencing and analysis of the Diamond-Blackfan anemia disease locus RPS19.

scientific article

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community

scientific article

The EMBRACE web service collection

scientific article (publication date: July 2010)

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers

scientific article

The eBioKit, a stand-alone educational platform for bioinformatics

scientific article published on 14 September 2017

The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships

scientific article

The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

scientific article published on 24 September 2015

The origin of the 'Mycoplasma mycoides cluster' coincides with domestication of ruminants

scientific article

Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development

scientific article

Type 3 cystatins; fetuins, kininogen and histidine-rich glycoprotein

article

Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus

scientific article

Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3

scientific article

Workshop on laboratory protocol standards for the Molecular Methods Database

scientific article

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