List of works by Eric H. Davidson

A basal deuterostome genome viewed as a natural experiment

scientific article (publication date: 30 December 2007)

A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

scientific article published on 27 January 2012

A gene regulatory network controlling the embryonic specification of endoderm

scientific article published on 29 May 2011

A genomic regulatory network for development

scientific article (publication date: March 2002)

A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres.

scholarly article

A new method, using cis-regulatory control, for blocking embryonic gene expression

scientific article published on 14 March 2008

A new software package for predictive gene regulatory network modeling and redesign

scientific article published on 24 April 2013

A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

scientific article

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo

scientific article

A regulatory gene network that directs micromere specification in the sea urchin embryo.

scientific article

A very brief scientific reminiscence of John Gurdon

scientific article published in July 2014

Activation of pmar1 controls specification of micromeres in the sea urchin embryo

scientific article

An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network

scientific article published in May 2004

Assessing regulatory information in developmental gene regulatory networks

scientific article

Barcoded DNA-tag reporters for multiplex cis-regulatory analysis

scientific article

Boveri's long experiment: sea urchin merogones and the establishment of the role of nuclear chromosomes in development

scientific article

Brief notes on the meaning of a genomic control system for animal embryogenesis

scientific article published in January 2014

Building developmental gene regulatory networks

scientific article

Cis-regulatory logic driving glial cells missing: self-sustaining circuitry in later embryogenesis

scientific article published on April 2012

Computational representation of developmental genetic regulatory networks

scientific article

Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids

article

Deciphering the underlying mechanism of specification and differentiation: the sea urchin gene regulatory network

scientific article published on 14 November 2006

Development. Built to run, not fail

scientific article published in March 2007

Developmental Effector Gene Regulation: Multiplexed Strategies for Functional Analysis

article

Developmental biology at the systems level.

scientific article published on 12 November 2008

Developmental gene network analysis

scientific article published on January 2003

Developmental gene regulatory network architecture across 500 million years of echinoderm evolution

scientific article (publication date: 11 November 2003)

Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

scientific article published on 6 July 2012

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

scientific article published on 19 December 2012

Effect of Early and Late Interventions with Dietary Oils on Vascular and Neural Complications in a Type 2 Diabetic Rat Model

scientific article published on 07 August 2019

Effect of dietary oils on peripheral neuropathy-related endpoints in dietary obese rats.

scientific article published on 9 April 2018

Effect of mitoquinone (Mito-Q) on neuropathic endpoints in an obese and type 2 diabetic rat model

scientific article published on 24 April 2020

Emerging properties of animal gene regulatory networks

scientific article published on December 2010

Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

scientific article published on 20 February 2014

Eric Davidson

scientific article published in April 2012

Evolution of gene regulatory networks controlling body plan development

scientific article (publication date: 18 March 2011)

Evolutionary bioscience as regulatory systems biology

scientific article (publication date: September 2011)

Evolutionary plasticity of developmental gene regulatory network architecture

scholarly article

Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

scientific article

Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrorus purpuratus embryo

scientific article published on 10 May 2007

Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology

scientific article published on September 2009

Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa ⬇️

scientific article published on October 1, 2003

Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development

scientific article published in February 2005

Expression of AmKrox, a starfish ortholog of a sea urchin transcription factor essential for endomesodermal specification

scientific article published in August 2003

Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata

scientific article published in August 2003

Expression patterns of four different regulatory genes that function during sea urchin development

scientific article published in July 2004

Flexibility of transcription factor target site position in conserved cis-regulatory modules

scientific article published on 18 September 2009

Functional cis-regulatory genomics for systems biology

scientific article

Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.

scientific article

Gene regulation: gene control network in development

scientific article published on January 2007

Gene regulatory control in the sea urchin aboral ectoderm: spatial initiation, signaling inputs, and cell fate lockdown

scientific article published on 2 December 2012

Gene regulatory network analysis in sea urchin embryos.

scientific article

Gene regulatory network controlling embryonic specification in the sea urchin

scientific article published in August 2004

Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo ⬇️

scientific article

Gene regulatory networks

scientific article

Gene regulatory networks for development

scientific article

General approach for in vivo recovery of cell type-specific effector gene sets

scientific article published on 6 March 2014

Genome-wide assessment of differential effector gene use in embryogenesis

scientific article

Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning

scientific journal article

Genomic control of patterning

scientific article published on January 2009

Genomics, "Discovery Science," Systems Biology, and Causal Explanation: What Really Works?

scientific article published on January 2015

Geometric control of ciliated band regulatory states in the sea urchin embryo

scientific article

Global regulatory logic for specification of an embryonic cell lineage

scholarly article

High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development

scientific article

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution

scientific article (publication date: December 2006)

Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo.

scientific article published in September 2006

Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development

scientific article published on 22 August 2006

Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology

scientific article published on February 2016

Information processing at the foxa node of the sea urchin endomesoderm specification network

scientific article

Isolation of pigment cell specific genes in the sea urchin embryo by differential macroarray screening

scientific article

Logic of gene regulatory networks

scientific article published on 6 August 2007

Modeling DNA sequence-based cis-regulatory gene networks

scientific article

Modeling the dynamics of transcriptional gene regulatory networks for animal development.

scientific article

Modeling transcriptional regulatory networks

scientific article

Modularity and design principles in the sea urchin embryo gene regulatory network

scientific article

Network design principles from the sea urchin embryo

scientific article

New computational approaches for analysis of cis-regulatory networks.

scientific article published in June 2002

New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.

scientific article

New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN.

scientific article

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

scientific article

Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin

scientific article published in June 2002

Precambrian animal life: probable developmental and adult cnidarian forms from Southwest China

scientific article (publication date: August 2002)

Progressive Loss of Corneal Nerve Fibers and Sensitivity in Rats Modeling Obesity and Type 2 Diabetes Is Reversible with Omega-3 Fatty Acid Intervention: Supporting Cornea Analyses as a Marker for Peripheral Neuropathy and Treatment

scientific article published on 24 April 2020

Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus

scientific article

Quantitative imaging of cis-regulatory reporters in living embryos

scientific article

Questions over the scientific basis of epigenome project

scientific article published in Nature

R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres

scientific article published in October 2004

Regulation of spblimp1/krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula.

scientific article published on 10 May 2006

Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring

scientific article published on 12 October 2009

Regulatory Co-options in the Evolution of Deuterostome Immune Systems

Regulatory gene networks and the properties of the developmental process

scholarly article

Reorganization of sea urchin gene regulatory networks at least 268 million years ago as revealed by oldest fossil cidaroid echinoid

scientific article

Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo.

scientific article published in November 2006

Retrospective. Roy J. Britten (1919-2012)

scientific article

Roy J. Britten, 1919-2012: our early years at Caltech

scientific article published on 12 April 2012

Sea urchin Forkhead gene family: phylogeny and embryonic expression

scientific article published on 22 September 2006

Sea urchin embryo mRNA sequences expressed in the nuclear RNA of adult tissues

scientific article published on 01 August 1978

Small bilaterian fossils from 40 to 55 million years before the cambrian

scientific article

SpBase: the sea urchin genome database and web site

scientific article (publication date: 2009)

SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis.

scientific article published in September 2004

Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks

scientific article published in September 2003

Sponge grade body fossil with cellular resolution dating 60 Myr before the Cambrian

scientific article

The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

scientific article

The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example

scientific article published on 10 June 2009

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The last common bilaterian ancestor ⬇️

scientific article published in July 2002

The sea urchin genome: where will it lead us?

scientific article

The uncommon roles of common gene regulatory factors in the genomes of differentiating cells

scientific article published on 30 April 2014

Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics

scientific article

Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution

scientific article (publication date: 22 April 2008)

Twins Raised from Separated Blastomeres Develop into Sexually MatureStrongylocentrotus purpuratus,

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks

scientific article

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening

scientific article

cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin.

scientific article published on March 2004

cis-Regulatory control circuits in development

scientific article published on July 2004

cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification

scientific article published on 02 June 2006

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