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List of works by Erez Lieberman Aiden

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

scientific article published on 28 May 2021

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

scientific article (publication date: 18 December 2014)

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers

scientific article published on 08 August 2019

A Postural Assessment Utilizing Machine Learning Prospectively Identifies Older Adults at a High Risk of Falling

scientific article published on 04 December 2020

A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.).

scientific article published on 16 March 2022

A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits

scientific article published in September 2022

A rapid, low cost, and highly sensitive SARS-CoV-2 diagnostic based on whole genome sequencing

scientific article published on 26 April 2020

A simple rule for the evolution of cooperation on graphs and social networks

scientific article

Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations

scientific article published on 29 November 2019

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

scientific article published on 03 March 2020

CTCF looping is established during gastrulation in medaka embryos

scientific article published on 18 May 2021

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

scientific article published on 12 February 2021

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C

scientific article published on 01 April 2020

Chromatin Is Frequently Unknotted at the Megabase Scale

scientific article published on 13 November 2019

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

scientific article published on 18 May 2021

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

scientific article published on 23 October 2015

Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild

scientific article published on 04 May 2020

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement

scientific article published on 03 November 2021

Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (<i>Mustela nigripes</i>)

scientific article published on 30 May 2023

Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

scientific article published on 29 March 2022

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

scientific article published on 16 March 2021

Chromosome-length genome assembly of Teladorsagia circumcincta - a globally important helminth parasite in livestock

scientific article published on 15 February 2023

Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation

scientific article published on 15 February 2022

Cohesin Loss Eliminates All Loop Domains

scientific article published in October 2017

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

scientific article published on 01 December 2020

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

scientific article (publication date: 9 October 2009)

Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

scientific article published on 18 August 2020

Culturomics—Response

scientific article published on 31 March 2011

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

scientific article (publication date: 23 March 2017)

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.

scientific article published on 31 October 2017

Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

scientific article published on 18 July 2016

Delineating the Insertion Landscape of the Model Legume cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

scientific article published on 21 April 2021

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

scientific article published on 17 February 2020

Essential role of Cp190 in physical and regulatory boundary formation

scientific article published on 13 May 2022

Evolutionary dynamics on graphs

scientific article

Exploring chromosomal structural heterogeneity across multiple cell lines

scientific article published on 13 October 2020

GE Prize essay. Zoom!

scientific article

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

scientific article published on 05 August 2020

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

scientific article published on 09 July 2018

Genome Organization Drives Chromosome Fragility

scientific article

Genome-wide diversity in the California condor tracks its prehistoric abundance and decline

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

scientific article

Genomic signatures of barley breeding for environmental adaptation to the new continents

scientific article published in September 2023

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

scientific article published on 29 January 2021

Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

scientific article published on 01 August 2020

Hi-C: a method to study the three-dimensional architecture of genomes

scientific article

High-quality reference genome for Clonorchis sinensis

scientific article published in May 2021

High-resolution antibody dynamics of vaccine-induced immune responses

scientific article (publication date: April 2014)

Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus).

scientific article published on 16 November 2017

Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

Improved reference genome of Aedes aegypti informs arbovirus vector control

scientific article published in Nature

Jean-Baptiste Michel + Erez Lieberman Aiden: What we learned from 5 million books

TEDxBoston 2011

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

scientific article published on July 2016

Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data

scientific article published on 5 February 2018

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

scientific article published on July 2016

Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity

scientific article published on 01 May 2020

Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function

scientific article published on 01 January 2019

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation

scientific article published on 28 July 2017

Nuclear biology: what's been most surprising?

scientific article published on March 2013

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map.

scientific article published in August 2017

Quantifying the evolutionary dynamics of language

scientific article (publication date: 11 October 2007)

Quantitative analysis of culture using millions of digitized books

scientific article

Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response

scientific article published on 01 April 2019

Somatic Rearrangement in B Cells: It's (Mostly) Nuclear Physics

scientific article (publication date: 13 August 2015)

Somatic structural variant formation is guided by and influences genome architecture

scientific article published on 17 February 2022

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

scientific article published in September 2017

The Australian dingo is an early offshoot of modern breed dogs

scientific article published on 22 April 2022

The Earth BioGenome Project 2020: Starting the clock

scientific article published on 25 January 2022

The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution

scientific article published on 30 August 2021

The Energetics and Physiological Impact of Cohesin Extrusion

scientific article published on 26 April 2018

The Energetics and Physiological Impact of Cohesin Extrusion

scientific article published on 01 September 2018

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome

scientific article published on 06 October 2020

The expanding scope of DNA sequencing

scientific article

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination

scientific article published on 11 September 2019

The gene-rich genome of the scallop Pecten maximus

scientific article published on 01 May 2020

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

scientific article published on 01 May 2019

The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758

scientific article published on 03 February 2020

The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758

scientific article published on 19 February 2020

The swan genome and transcriptome, it is not all black and white

scientific article published on 23 January 2023

Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation

scientific article published on 01 December 2019

Transferable model for chromosome architecture

scientific article published on 29 September 2016

Uncharted: Big Data as a Lens on Human Culture

a scholarly work by Erez Lieberman Aiden, Jean-Baptiste Michel

Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States.

scientific article published on 28 November 2017

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

scientific article published on 26 December 2018

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