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List of works by Thomas A Kohl

A joint cross-border investigation of a cluster of multidrug-resistant tuberculosis in Austria, Romania and Germany in 2014 using classic, genotyping and whole genome sequencing methods: lessons learnt

scientific article

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

scientific article published on 29 July 2020

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

scientific article published on 28 November 2019

Adipose gene expression response of lean and obese mice to short-term dietary restriction.

scientific article published in June 2006

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches.

scientific article published on 26 April 2018

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

scientific article published on 02 December 2019

Aortic Endograft Infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014

article

Application of machine learning techniques to tuberculosis drug resistance analysis

scholarly article by Samaneh Kouchaki et al published 21 November 2018 in Bioinformatics

Comparative analysis of phenotypic and genotypic antibiotic susceptibility patterns in Mycobacterium avium complex

scientific article published on 05 March 2020

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

scientific article published in Scientific Reports

Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

scientific article published on 30 October 2018

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

scientific article published on 20 April 2016

Delamanid and Bedaquiline Resistance in Mycobacterium tuberculosis Ancestral Beijing Genotype Causing Extensively Drug-Resistant Tuberculosis in a Tibetan Refugee

scientific article published in February 2016

Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP

scientific article published on 12 May 2020

Detection of transrenal DNA for the diagnosis of pulmonary tuberculosis and treatment monitoring.

scientific article

Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins

scientific article published on 16 April 2015

Direct DNA Extraction from Mycobacterium tuberculosis Frozen Stocks as a Reculture-Independent Approach to Whole-Genome Sequencing.

scientific article published on 27 May 2015

Drug-resistance profiling and transmission dynamics of multidrug-resistant in Saudi Arabia revealed by whole genome sequencing

article

Emended description of Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus and Mycobacteriumabscessus subsp. bolletii and designation of Mycobacteriumabscessus subsp. massiliense comb. nov.

scientific article published on 4 August 2016

Erratum to: Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins

scientific article

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

scientific article published on 19 January 2015

Extent of transmission captured by contact tracing in a tuberculosis high endemic setting

article

Fast update of undetected Mycobacterium chimaera infections to reveal unsuspected cases

scientific article published on 01 September 2018

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

scientific article

Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study

scientific article

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study

scientific article published on 12 July 2017

Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System

article

High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial

scientific article

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

scientific article published on 25 October 2012

Impact of Genetic Diversity on the Biology of Mycobacterium tuberculosis Complex Strains

scientific article published on November 2016

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak

scientific article published on 30 September 2020

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

scientific article published in Scientific Reports

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia

scientific article published on 01 March 2019

Loss of Mobile Genomic Islands in Metal-Resistant, Hydrogen-Oxidizing Cupriavidus metallidurans

scientific article published in 2022

MTBseq: a comprehensive pipeline for whole genome sequence analysis of complex isolates

scientific article published on 13 November 2018

MoRAine--a web server for fast computational transcription factor binding motif re-annotation.

scientific article published on 25 August 2008

Multicentre study to establish interpretive criteria for clofazimine drug susceptibility testing

scientific article published on 01 May 2019

Multidrug- and Extensively Drug-Resistant Mycobacterium tuberculosis Beijing Clades, Ukraine, 2015

scientific article published on 01 March 2020

Mycobacterium abscessus in patients with cystic fibrosis: low impact of inter-human transmission in Italy.

scientific article published on 13 July 2017

Mycobacterium abscessus subsp. abscessus Is Capable of Degrading Pseudomonas aeruginosa Quinolone Signals

scientific article published on 2 March 2017

Mycobacterium abscessus, a taxonomic puzzle

scientific article

Mycobacterium bovis Persistence in Two Different Captive Wild Animal Populations in Germany: a Longitudinal Molecular Epidemiological Study Revealing Pathogen Transmission by Whole-Genome Sequencing

article

No evidence for acquired mutations associated with cytochrome -inhibitor resistance in 13,559 clinical complex isolates

article

Perspectives for personalized therapy for patients with multidrug-resistant tuberculosis

scientific article published on 28 May 2018

Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression

scientific article (publication date: 2 December 2015)

Phenylacetic acid catabolism and its transcriptional regulation in Corynebacterium glutamicum

scientific article

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

scientific article

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

scientific article published on 06 March 2020

Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil

scientific article published on 04 February 2020

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

scientific article published on 26 September 2018

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

scientific article

Rapid genomic first- and second-line drug resistance prediction from clinical Mycobacterium tuberculosis specimens using Deeplex®-MycTB

scientific article published on 06 August 2020

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study ⬇️

scientific article

Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis"

scientific article published on 27 July 2018

Reply: Call for Regular Susceptibility Testing of Bedaquiline and Delamanid.

scientific article

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex

scientific article published on 24 May 2019

Role of alanine racemase mutations in Mycobacterium tuberculosis D-cycloserine resistance

scientific article published on 2 October 2017

Shaping the niche in macrophages: Genetic diversity of the M. tuberculosis complex and its consequences for the infected host.

scientific article published on 14 September 2017

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex

scientific article

The Genetic Transformation of Chlamydia pneumoniae

article

The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model.

scientific article

The genetic diversity of multi and extensively drug resistant in the capital of Iran revealed by whole genome sequencing

scientific article published on 02 January 2019

The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

scientific article published on 27 April 2020

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology

article

Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases

scientific article published on 01 December 2019

Tracing Mycobacterium tuberculosis transmission by whole genome sequencing in a high incidence setting: a retrospective population-based study in East Greenland

scientific article published on 12 September 2016

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

scientific article

Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region

scientific article published in 2023

Use of a Whole Genome Sequencing-based approach for Mycobacterium tuberculosis surveillance in Europe in 2017-2019: an ECDC pilot study

scientific article published on 30 July 2020

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis.

scientific article

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing.

scientific article

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

scientific article published on 01 September 2019

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients

scientific article (publication date: 2013)

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

scientific article (publication date: 2013)

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

scientific article published on 23 June 2015

Whole-genome sequencing for risk assessment of long-term Shiga toxin-producing Escherichia coli

scientific article published on April 2014

Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.

scientific article

rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains ⬇️

scientific article published on February 27, 2012

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