Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by Tanya Golubchik

1-50 of 50 results

View this query on the Wikidata Query Service
Diverse sources of C. difficile infection identified on whole-genome sequencing

scientific article published on September 2013
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

scientific article
Multilocus sequence typing of Clostridium difficile

scientific article
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

scientific article published on 5 March 2012
Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.

scientific article published on 05 February 2014
Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study

scientific article
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

scientific article
Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

scientific article
Clinical Clostridium difficile: clonality and pathogenicity locus diversity

scientific article
Effects of control interventions on Clostridium difficile infection in England: an observational study

scientific article published on 24 January 2017
Recombination and population structure in Salmonella enterica.

scientific article
Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

scientific article published on 26 September 2018
Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

scientific article published on 12 December 2013
Evolutionary history of the Clostridium difficile pathogenicity locus

scientific article
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

scientific article
Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

scientific article published on 29 January 2012
Asymptomatic Clostridium difficile colonisation and onward transmission

scientific article (publication date: 2013)
Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome sequencing

scientific article
Mind the gaps: evidence of bias in estimates of multiple sequence alignments

scientific article published on 20 August 2007
Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

scientific article published on 29 November 2012
A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

scientific article
Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses

scientific article published on 22 April 2015
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

scientific article published on 23 November 2017
Severe infections emerge from commensal bacteria by adaptive evolution

scientific article published on 19 December 2017
Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone

scientific article published on 21 December 2013
Accuracy of Different Bioinformatics Methods in Detecting Antibiotic Resistance and Virulence Factors from Staphylococcus aureus Whole-Genome Sequences

scientific article published on 27 August 2018
Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

article
Whole-Genome Sequencing Reveals the Contribution of Long-Term Carriers in Staphylococcus aureus Outbreak Investigation.

scientific article
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

scientific article published in January 2018
Identification of antigens specific to non-tuberculous mycobacteria: the Mce family of proteins as a target of T cell immune responses

scientific article
Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

scientific article published on 08 May 2019
Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

scientific article published on 20 April 2016
Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial

scientific article
Severe infections emerge from the microbiome by adaptive evolution

Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Rosenbach 1884

scientific article published on 25 April 2019
Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda

scientific article published on 18 March 2020
High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment

scientific article published on 27 February 2020
Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load

scientific article published on 08 August 2020
A comprehensive genomics solution for HIV surveillance and clinical monitoring in a global health setting

Reply to Mills and Linkin

scientific article published on 20 May 2014
A comprehensive genomics solution for HIV surveillance and clinical monitoring in low income settings

scientific article published on 15 July 2020
Simultaneous Viral Whole-Genome Sequencing and Differential Expression Profiling in Respiratory Syncytial Virus Infection of Infants

scientific article published on 23 July 2020
Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

article
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Lineage replacement and evolution captured by three years of the United Kingdom Covid Infection Survey

High number of SARS-CoV-2 persistent infections uncovered through genetic analysis of samples from a large community-based surveillance study

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype

scientific article published on 17 June 2020
Oxford Screening CSF and Respiratory samples ('OSCAR'): results of a pilot study to screen clinical samples from a diagnostic microbiology laboratory for viruses using Illumina next generation sequencing

scientific article published on 9 February 2018
Early analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein

scientific article

Paulina is supported by:

About Paulina

Help