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List of works by Julian Uszkoreit

A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients

scientific article

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

A standardized framing for reporting protein identifications in mzIdentML 1.2

scientific article

BioContainers: An open-source and community-driven framework for software standardization

scientific article

BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication.

scientific article

Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry

scientific article published on 12 September 2018

Differential proteomic analysis of abnormal intramyoplasmic aggregates in desminopathy

scientific article

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

scientific article published on 4 August 2016

New insights into the protein aggregation pathology in myotilinopathy by combined proteomic and immunolocalization analyses.

scientific article published on 3 February 2016

One Sample, One Shot - Evaluation of sample preparation protocols for the mass spectrometric proteome analysis of human bile fluid without extensive fractionation.

scientific article published on 05 December 2016

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface

scientific article published on 10 June 2015

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

scientific article

Proceedings of the EuBIC Winter School 2017.

scientific article published on 03 April 2017

Proceedings of the EuBIC developer's meeting 2018

article

Protein Inference Using PIA Workflows and PSI Standard File Formats

scientific article published on 05 December 2018

Protein inference using PIA workflows and PSI standard file formats

scholarly article published 23 September 2018

Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis.

scientific article

Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition

scientific article published on 07 November 2019

Search and decoy: the automatic identification of mass spectra.

scientific article published in January 2012

Sense and nonsense of pathway analysis software in proteomics.

scientific article published on 14 November 2011

Ten Simple Rules for Taking Advantage of Git and GitHub

scientific article (publication date: July 2016)

The PRIDE database and related tools and resources in 2019: improving support for quantification data

scientific article

The bacterial proteogenomic pipeline

scientific article published on 8 December 2014

The mzIdentML data standard version 1.2, supporting advances in proteome informatics.

scientific article

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics

scientific article (publication date: August 2013)

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

scientific article published in December 2023

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

scientific article

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