Search filters

List of works by Edward F. DeLong

A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast

scientific article published on 11 November 2010

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

scientific article published on 23 September 2019

A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov ⬇️

scientific article

A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum

scientific article

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean

scientific article

Aerobic production of methane in the sea

article

Alien invasions and gut "island biogeography".

scientific article published in October 2014

All in the packaging

scientific article published in Nature

Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

scientific article published on 07 July 2020

Archaea in coastal marine environments

scientific article

Archaeal mysteries of the deep revealed

scholarly article

Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease

scientific article

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

scientific article published on 19 February 2020

Bacterial Succession on Sinking Particles in the Ocean's Interior

scientific article

Bacteriophage Distributions and Temporal Variability in the Ocean's Interior

scientific article

Biogeochemical Dynamics in Adjacent Mesoscale Eddies of Opposite Polarity

scientific article published in 2022

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean.

scientific article published on 24 May 2019

Characterization of a DMSP-degrading bacterial isolate from the Sargasso Sea

article

Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium

scientific article

Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods

scientific article

Climate change and the integrity of science

scientific article

Closely related phytoplankton species produce similar suites of dissolved organic matter.

scientific article published on 28 March 2014

Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean

scientific article published on 08 October 2020

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities ⬇️

scientific article published on March 22, 2011

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces

scientific article

Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria

scientific article published in February 2006

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre

scientific article

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea

scientific article published on February 2002

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis ⬇️

scientific article published on April 26, 2012

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis.

scientific article published on 16 October 2012

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle

scientific article

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

scientific article

Correction: Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota

erratum published in 2006

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

scholarly article published in PLOS Biology

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

erratum published in 2012

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

erratum published in 2012

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times.

scientific article published on 3 May 2012

Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times.

scientific article

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities

scientific article

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

scientific article

Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes

scientific article

Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters

scientific article published on 24 September 2019

Diel cycling and long-term persistence of viruses in the ocean's euphotic zone.

scientific article published on 11 October 2017

Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses on earth

scientific article published on 07 February 2020

Different SAR86 subgroups harbour divergent proteorhodopsins

scientific article published in September 2004

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

scientific article

Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column

scientific article published on 12 July 2022

Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre

scientific article

Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean

scientific article published in 2022

Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker

scientific article

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

scientific article published on 14 February 2020

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

scientific article

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

scientific article

Enhanced metabolic versatility of planktonic sulfur-oxidizing γ-proteobacteria in an oxygen-deficient coastal ecosystem

Environmental Diversity of Bacteria and Archaea

scientific article

Environmental drivers of a microbial genomic transition zone in the ocean's interior.

scientific article published on 14 August 2017

Erratum: Corrigendum: Genomic perspectives in microbial oceanography

scientific article published in Nature

Evolution. Microbial evolution in the wild

scientific article published on 01 April 2012

Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton

scientific article

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

scientific article

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria

scientific article

Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations

scientific article published on 11 January 2016

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

scientific article

Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum

scientific article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genomic islands and the ecology and evolution of Prochlorococcus.

scientific article

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations

scientific article

Genomic perspectives in microbial oceanography

scientific article

Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone

scientific article published on 20 February 2015

Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.

scientific article published on May 2015

Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor

scientific article

Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a continuous-flow bioreactor

scientific article published on July 2005

High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures

scientific article published on 15 May 2015

Histones in crenarchaea

scientific article

Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea

scientific article

Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies

scientific article

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

scientific article

Interesting things come in small packages

scientific article

Iron Depletion in the Deep Chlorophyll Maximum: Mesoscale Eddies as Natural Iron Fertilization Experiments

scientific article

Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter

scientific article published on 26 September 2017

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean

scientific article published on 01 September 2019

Large-scale screens of metagenomic libraries

scientific article

Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium ⬇️

scientific article published on 07 April 2011

Low genomic diversity in tropical oceanic N2-fixing cyanobacteria

scholarly article

MOLECULAR PHYLOGENETIC ANALYSIS OF THE HETEROTROPHIC CHRYSOPHYTE GENUS PARAPHYSOMONAS (CHRYSOPHYCEAE), AND THE DESIGN OF rRNA-TARGETED OLIGONUCLEOTIDE PROBES FOR TWO SPECIES

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

scientific article

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010

scientific article (publication date: 4 December 2010)

Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).

scientific article

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

scientific article

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta

scientific article published in August 2005

Metatranscriptomic Analysis of Sulfur Oxidation Genes in the Endosymbiont of Solemya Velum ⬇️

scientific article published on June 20, 2011

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

scientific article

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria

scientific article

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

scientific article

Microbial Sources of Exocellular DNA in the Ocean

scientific article published on 21 March 2022

Microbial communities in nature and laboratory--interview

scientific article published on 28 May 2007

Microbial community gene expression in ocean surface waters

scientific article

Microbial community genomics in the ocean

scientific article

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

scientific article

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

scientific article published on 19 May 2015

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

scientific article published on 9 March 2015

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

scientific article

Microbial dynamics of elevated carbon flux in the open ocean’s abyss

scientific article published in 2021

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile

scientific article

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

scientific article

Microbial population genomics and ecology

scientific article

Microbial population genomics and ecology: the road ahead

scientific article published in September 2004

Microbiology. Life on the thermodynamic edge

scientific article published on 01 July 2007

Microbiology. Microbial life breathes deep

scientific article published in December 2004

Modern microbial seascapes. Forward

scientific article published in October 2007

Molecular diversity among marine picophytoplankton as revealed by psbA analyses.

scientific article published in March 2003

Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments

scientific article

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes

scientific article published on 5 February 2009

Novel Integrative Elements and Genomic Plasticity in Ocean Ecosystems

scientific article published on 08 April 2021

Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

scientific article published in October 2003

Novel integrative elements and genomic plasticity in ocean ecosystems

scientific article published on 28 December 2020

Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

scientific article

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile

scientific article

Oxygen minimum zones harbour novel viral communities with low diversity

scientific article

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

scientific article

Pattern and synchrony of gene expression among sympatric marine microbial populations.

scientific article

Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre

scientific article published on 01 October 2019

PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond

scientific article published on 11 May 2012

Phosphate-limited ocean regions select for bacterial populations enriched in the carbon-phosphorus lyase pathway for phosphonate degradation

scientific article published on 27 May 2019

Phosphite utilization by the marine picocyanobacterium Prochlorococcus MIT9301

scientific article published on 18 October 2011

Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre

scientific article

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data

scientific article published on 31 July 2020

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean

scientific article

Planktonic microbial signatures of sinking particle export in the open ocean’s interior

scientific article published on 7 November 2023

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

scientific article

Power from the deep

scientific article published on 01 August 2002

Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics

scientific article published on 01 January 2013

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

scientific article published on 30 July 2013

Proteorhodopsin genes are distributed among divergent marine bacterial taxa

scientific article published on 17 October 2003

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

scientific article published in February 2006

Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla

scientific article

Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre ⬇️

scientific article published on 23 February 2018

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations ⬇️

scientific article published on November 19, 2012

Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter.

scientific article

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

scientific article

Reconstructing the wild types

scientific article published in Nature

Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean

scientific article published on 19 September 2014

Reverse methanogenesis: testing the hypothesis with environmental genomics

scientific article published in September 2004

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean

scientific article (publication date: 13 December 2016)

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

scientific article

Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia

scientific article

Structural Mechanism for Light-driven Transport by a New Type of Chloride Ion Pump, Nonlabens marinus Rhodopsin-3.

scientific article published on 30 June 2016

Thank You Ken, Joan and Dave, for 20 years of Environmental Microbiology!

scientific article published on 01 June 2018

The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times

scientific article

The microbial engines that drive Earth's biogeochemical cycles.

scientific article

The microbial ocean from genomes to biomes

scientific article

Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray

scientific article published in January 2011

Towards a microbial universal theory of all (nearly) totality: MUTANT

scientific article published on 01 June 2018

Towards microbial systems science: integrating microbial perspective, from genomes to biomes

scientific article published on 01 January 2002

Transcriptional responses of surface water marine microbial assemblages to deep‐sea water amendment ⬇️

scientific article published on October 9, 2011

Unsuspected diversity among marine aerobic anoxygenic phototrophs

scientific article

Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses

scientific article

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

scientific article published on 8 December 2015

Paulina is supported by:

About Paulina

Help