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Authors whose works are in public domain in at least one jurisdiction

List of works by Zigui Chen

A Bayesian method for synthesizing multiple diagnostic outcomes of COVID-19 tests

scientific article published on 15 September 2021

A molecular phylogenetic investigation of Pseudoamphisiella and Parabirojimia (Protozoa, Ciliophora, Spirotrichea), two genera with ambiguous systematic positions.

scientific article

A new investigation of the marine ciliate, Trachelostyla pediculiformis (Cohn, 1866) Borror, 1972 (Ciliophora, Hypotrichida), with establishment of a new genus, Spirotrachelostyla nov. gen.

scientific article

A novel papillomavirus isolated from proliferative skin lesions of a wild American beaver (Castor canadensis).

scientific article published on 29 May 2012

A population-based prospective study of carcinogenic human papillomavirus variant lineages, viral persistence, and cervical neoplasia

scientific article

Alterations in Enteric Virome Associate With Colorectal Cancer and Survival Outcomes.

scientific article

Analysis of the internal transcribed spacer 2 (ITS2) region of scuticociliates and related taxa (Ciliophora, Oligohymenophorea) to infer their evolution and phylogeny.

scientific article published in October 2008

Ancient Evolution and Dispersion of Human Papillomavirus Type 58 Variants

scientific article

Associations of Oral α-, β-, and γ-Human Papillomavirus Types With Risk of Incident Head and Neck Cancer ⬇️

scientific article published on 21 January 2016

Characterization and Diversity of 243 Complete Human Papillomavirus Genomes in Cervical Swabs Using Next Generation Sequencing

scientific article published on 14 December 2020

Characterization and experimental transmission of an oncogenic papillomavirus in female macaques.

scientific article published on 11 April 2007

Characterization of HPV DNA methylation of contiguous CpG sites by bisulfite treatment and massively parallel sequencing-the FRAGMENT approach.

scientific article

Characterization of human papillomavirus type 120: a novel betapapillomavirus with tropism for multiple anatomical niches.

scientific article published on 2 May 2012

Characterization of the North American beaver (Castor canadensis) papillomavirus genome.

scientific article published on 15 November 2013

Classification and evolution of human papillomavirus genome variants: Alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61)

scientific article published on 11 January 2018

Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments

scientific article

Clinical features and seasonality of parechovirus infection in an Asian subtropical city, Hong Kong

scientific article published on 8 September 2017

Comparison of three human papillomavirus DNA detection methods: Next generation sequencing, multiplex-PCR and nested-PCR followed by Sanger based sequencing.

scientific article published on 23 October 2015

Complete Genome Sequence of a Novel Human Papillomavirus Isolated from Oral Rinse.

scientific article

Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

article

Complete Genome Sequences of Three Novel Saimiri sciureus Papillomavirus Types Isolated from the Cervicovaginal Region of Squirrel Monkeys

scientific article

Condylomatous genital lesions in cynomolgus macaques from Mauritius

scientific article published on 21 December 2012

Cross-protection of the Bivalent Human Papillomavirus (HPV) Vaccine Against Variants of Genetically Related High-Risk HPV Infections.

scientific article

Deep sequencing of HPV16 genomes: A new high-throughput tool for exploring the carcinogenicity and natural history of HPV16 infection

scientific article

Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19

scientific article published on 20 July 2020

Detection and Genotyping of Human Papillomaviruses from Archival Formalin-Fixed Tissue Samples

scientific article

Determinants and Interactions of Oral Bacterial and Fungal Microbiota in Healthy Chinese Adults

Diversity of macaque microbiota compared to the human counterparts

scientific article published in Scientific Reports

Does Kiitricha (Protista, Ciliophora, Spirotrichea) belong to Euplotida or represent a primordial spirotrichous taxon? With suggestion to establish a new subclass Protohypotrichia.

scientific article

Erratum for Chen et al., "Complete Genome Sequence of a Novel Human Papillomavirus Isolated from Oral Rinse".

scientific article published on 31 May 2018

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota

scientific article published in Scientific Reports

Evidence for a distinct gut microbiome in kidney stone formers compared to non-stone formers.

scientific article

Evolution and classification of oncogenic human papillomavirus types and variants associated with cervical cancer

scientific article published on January 2015

Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70.

scientific article

Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67

scientific article published in 2011

Frequent Genetic Mismatch between Vaccine Strains and Circulating Seasonal Influenza Viruses, Hong Kong, China, 1996-2012

article

Genomic Epidemiology of Multidrug-Resistant Nontyphoidal Salmonella in Young Children Hospitalized for Gastroenteritis

scientific article published on 04 August 2021

Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1.

scientific article

Genomic diversity and interspecies host infection of alpha12 Macaca fascicularis papillomaviruses (MfPVs).

scientific article published on 28 August 2009

Geographical distribution and oncogenic risk association of human papillomavirus type 58 E6 and E7 sequence variations ⬇️

scientific article published on November 29, 2012

Geographical distribution and risk association of human papillomavirus genotype 52-variant lineages.

scientific article

Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences

scientific article published on 30 March 2016

Global genomic diversity of human papillomavirus 6 based on 724 isolates and 190 complete genome sequences

scientific article

HPV Infection and Cervical Screening in Socially Isolated Indigenous Women Inhabitants of the Amazonian Rainforest.

scientific article published on 24 July 2015

HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis

scientific article published on September 2017

HPV16 Sublineage Associations With Histology-Specific Cancer Risk Using HPV Whole-Genome Sequences in 3200 Women

scientific article published on 29 April 2016

HPV16 methyl-haplotypes determined by a novel next-generation sequencing method are associated with cervical precancer

scientific article

HPV16 transmission between a couple with HPV-related head and neck cancer.

scientific article published on 3 December 2007

Human Papillomavirus 58 E7 T20I/G63S Variant Isolated from an East Asian Population Possesses High Oncogenicity

scientific article published on 31 March 2020

Human papillomavirus 16 non-European variants are preferentially associated with high-grade cervical lesions

scientific article

Human papillomavirus 33 worldwide genetic variation and associated risk of cervical cancer

scientific article

Human papillomavirus genome variants

scientific article

Human papillomavirus genomics: past, present and future

scientific article published on 13 March 2014

Human papillomavirus type 18 oncoproteins exert their oncogenicity in esophageal and tongue squamous cell carcinoma cell lines distinctly

scientific article published on 12 December 2019

Human papillomaviruses: genetic basis of carcinogenicity.

scientific article

Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling

scientific article published on 01 January 2019

Impact of inter- and intra-individual variation, sample storage and sampling fraction on human stool microbial community profiles

scientific article published on 11 January 2019

In vitro inhibition of human papillomavirus following use of a carrageenan-containing vaginal gel.

scientific article

Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas.

scientific article published on May 2004

Lactobacillus crispatus dominant vaginal microbiome is associated with inhibitory activity of female genital tract secretions against Escherichia coli

scientific article

Limited Impact of SARS-CoV-2 on the Human Naso-Oropharyngeal Microbiota in Hospitalized Patients

Liquid biopsy of HPV DNA in cervical cancer

scientific article published on 12 March 2019

Longitudinal Cytokine Profile in Patients With Mild to Critical COVID-19

scientific article published on 06 December 2021

Lower airway microbiota and mycobiota in children with severe asthma

scientific article published on 12 October 2017

Molecular epidemiological study of enterovirus D68 in hospitalised children in Hong Kong in 2014-2015 and their complete coding sequences

scientific article published on 01 July 2019

Mucosal microbiome dysbiosis in gastric carcinogenesis.

scientific article

Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers

scientific article published on 11 April 2018

Niche adaptation and viral transmission of human papillomaviruses from archaic hominins to modern humans

article

Non-human Primate Papillomaviruses Share Similar Evolutionary Histories and Niche Adaptation as the Human Counterparts

scientific article published on 10 September 2019

Non-human primate papillomavirus E6-mediated p53 degradation reveals ancient evolutionary adaptation of carcinogenic phenotype to host niche

scientific article published on 25 March 2022

Novel Betapapillomavirus Associated With Hand and Foot Papillomas in a Cynomolgus Macaque ⬇️

scientific article published on October 4, 2010

Novel genital alphapapillomaviruses in baboons (Papio hamadryas anubis) with cervical dysplasia.

scientific article published on 23 March 2012

Oncogenic comparison of human papillomavirus type 58 E7 variants

scientific article published on 21 December 2018

Oncogenicitiy Comparison of Human Papillomavirus Type 52 E6 Variants

scientific article published on 24 January 2019

Oral Alpha, Beta and Gamma HPV Types and Risk of Incident Esophageal Cancer

Oral human papillomavirus detection in older adults who have human immunodeficiency virus infection

scientific article

Papillomaviruses: evolution, Linnaean taxonomy and current nomenclature

scientific article published on 7 December 2010

Phylogenetic analyses suggest thatPsammomitra(Ciliophora, Urostylida) should represent an urostylid family, based on small subunit rRNA and alpha-tubulin gene sequence information

article

Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses

scientific article

Phylogenetic position of the marine ciliate, Cardiostomatella vermiforme (Kahl, 1928) Corliss, 1960 inferred from the complete SSrRNA gene sequence, with establishment of a new order Loxocephalida n. ord. (Ciliophora, Oligohymenophorea).

scientific article published on 17 April 2006

Phylogeny of six genera of the subclass Haptoria (Ciliophora, Litostomatea) inferred from sequences of the gene coding for small subunit ribosomal RNA

scientific article

Phylogeny of some systematically uncertain urostyloids--Apokeronopsis, Metaurostylopsis, Thigmokeronopsis (Ciliophora, Stichotrichia) estimated with small subunit rRNA gene sequence information: discrepancies and agreements with morphological data.

scientific article

Prevalence and Epidemiologic Profile of Oral Infection with Alpha, Beta, and Gamma Papillomaviruses in an Asian Chinese Population

article

Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens

scientific article published on 21 March 2022

Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex

scientific article

Reconsideration of the phylogenetic positions of five peritrich genera, Vorticella, Pseudovorticella, Zoothamnopsis, Zoothamnium, and Epicarchesium (Ciliophora, Peritrichia, Sessilida), based on small subunit rRNA gene sequences.

scientific article

Role of polycyclic aromatic hydrocarbons as a co-factor in human papillomavirus-mediated carcinogenesis

scientific article published on 11 February 2019

Sequence imputation of HPV16 genomes for genetic association studies

scientific article

Southern Chinese populations harbour non-nucleatum Fusobacteria possessing homologues of the colorectal cancer-associated FadA virulence factor

scientific article published on 12 February 2020

Systematic review of human gut resistome studies revealed variable definitions and approaches

scientific article published on 16 January 2020

The Intersection between Oral Microbiota, Host Gene Methylation and Patient Outcomes in Head and Neck Squamous Cell Carcinoma

scientific article published on 18 November 2020

The Oral Cavity Contains Abundant Known and Novel Human Papillomaviruses From the Betapapillomavirus and Gammapapillomavirus Genera ⬇️

scientific article published on September 1, 2011

The carcinogenicity of human papillomavirus types reflects viral evolution

scientific article

The cervical microbiome over 7 years and a comparison of methodologies for its characterization

scientific article

The human oral cavity microbiota composition during acute tonsillitis: a cross-sectional survey

scientific article published on 05 December 2019

The role of human papillomavirus in laryngeal cancer in Southern China.

scientific article published on 15 February 2018

Three-gene based phylogeny of the Urostyloidea (Protista, Ciliophora, Hypotricha), with notes on classification of some core taxa

scientific article

Variants of human papillomaviruses 16 and 18 and their natural history in human immunodeficiency virus-positive women

scientific article published in October 2005

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