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List of works by Manoj Prasad

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics

scientific article published on 12 January 2007

A comprehensive study on dehydration-induced antioxidative responses during germination of Indian bread wheat (Triticum aestivum L. em Thell) cultivars collected from different agroclimatic zones

scientific article published on July 2012

A microsatellite marker associated with a QTL for grain protein content on chromosome arm 2DL of bread wheat

A study of the role of gene TaMYB2 and an associated SNP in dehydration tolerance in common wheat ⬇️

scientific article published on October 12, 2012

Advances in Agrobacterium tumefaciens-mediated genetic transformation of graminaceous crops.

scientific article

Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses.

scientific article

An efficient Agrobacterium-mediated genetic transformation method for foxtail millet (Setaria italica L.).

scientific article published on 14 January 2020

An overview of wheat genome sequencing and its implications for crop improvement.

scientific article published in December 2014

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

scientific article (publication date: 2015)

Application of molecular antiviral compounds: novel approach for durable resistance against geminiviruses.

scientific article published on 05 February 2015

Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)].

scientific article

Association of an allele-specific marker with dehydration stress tolerance in foxtail millet suggests SiDREB2 to be an important QTL

scientific article published in 2013

Big genomic data analysis leads to more accurate trait prediction in hybrid breeding for yield enhancement in crop plants

scientific article published in 2021

Biotechnological approaches to dissect climate-resilient traits in millets and their application in crop improvement

scientific article published in 2021

C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses

scientific article published on 11 June 2014

Characterization and genetic linkage mapping of the horticulturally important mutation leafless inflorescence (lli) in periwinkle Catharanthus roseus

Characterization of microsatellites and development of chromosome specific STMS markers in bread wheat

article

Chilli leaf curl virus infection highlights the differential expression of genes involved in protein homeostasis and defense in resistant chilli plants.

scientific article published on 19 February 2015

Chromatin-Based Epigenetic Regulation of Plant Abiotic Stress Response

scientific article published on December 2016

Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress

scientific article

Comparative transcriptome analysis of differentially expressed genes in foxtail millet (Setaria italica L.) during dehydration stress

scientific article

Comprehensive analysis of SET domain gene family in foxtail millet identifies the putative role of SiSET14 in abiotic stress tolerance

scientific article published on 02 September 2016

Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database

article

Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.).

scientific article

Construction of genetic linkage map of the medicinal and ornamental plant Catharanthus roseus.

scientific article published in December 2007

Dehydration-responsive miRNAs in foxtail millet: genome-wide identification, characterization and expression profiling

scientific article published on 16 December 2015

Development and utilization of novel SSRs in foxtail millet [Setaria italica(L.) P. Beauv.]

article

Development and utilization of novel intron length polymorphic markers in foxtail millet (Setaria italica (L.) P. Beauv.).

scientific article

Development of 5123 intron-length polymorphic markers for large-scale genotyping applications in foxtail millet

scientific article published on October 2013

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species

scientific article

Development of novel microRNA-based genetic markers in foxtail millet for genotyping applications in related grass species

article

Differential antioxidative responses to dehydration-induced oxidative stress in core set of foxtail millet cultivars [Setaria italica (L.)].

scientific article published on January 2011

Differential expression of peroxidase and ABC transporter as the key regulatory components for degradation of azo dyes by Penicillium oxalicum SAR-3.

scientific article

Dynamics of defense-related components in two contrasting genotypes of tomato upon infection with Tomato Leaf Curl New Delhi Virus.

scientific article

EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome

scientific article published on 30 October 2007

Editorial: Abiotic Stress Signaling in Plants: Functional Genomic Intervention.

scientific article published on 20 May 2016

Epigenetic mechanisms of plant stress responses and adaptation.

scientific article published on 30 May 2013

Epigenetics and Epigenomics of Plants.

scientific article published on 23 January 2018

Exploration of millet models for developing nutrient rich graminaceous crops

scientific article published on 29 August 2015

Expression genetics and haplotype analysis reveal cis regulation of serine carboxypeptidase I (Cxp1), a candidate gene for malting quality in barley (Hordeum vulgare L.).

scientific article

FmMDb: a versatile database of foxtail millet markers for millets and bioenergy grasses research

scientific article

FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets

scientific article published on 09 July 2014

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses

scientific article published on 18 September 2012

Geminiviruses and Plant Hosts: A Closer Examination of the Molecular Arms Race.

scientific article published on 15 September 2017

Genetic determinants of micronutrient traits in graminaceous crops to combat hidden hunger

scientific article published in 2021

Genetic dissection of grain weight in bread wheat through quantitative trait locus interval and association mapping

article by R. R. Mir et al published 7 January 2012 in Molecular Breeding

Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues

scientific article

Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

scientific article

Genetic diversity of the conserved motifs of six bacterial leaf blight resistance genes in a set of rice landraces

scientific article

Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.

scientific article

Genome-wide QTL analysis for pre-harvest sprouting tolerance in bread wheat

article

Genome-wide SNP identification and characterization in two soybean cultivars with contrasting Mungbean Yellow Mosaic India Virus disease resistance traits

scientific article

Genome-wide analysis of heat shock proteins in C4 model, foxtail millet identifies potential candidates for crop improvement under abiotic stress.

scientific article published on 02 September 2016

Genome-wide development and use of microsatellite markers for large-scale genotyping applications in foxtail millet [Setaria italica (L.)]

scientific article published on 3 February 2013

Genome-wide development of transposable elements-based markers in foxtail millet and construction of an integrated database

scientific article

Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.).

scientific article published on 23 January 2014

Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.).

scientific article

Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling

scientific article

IRONing out stress problems in crops: a homeostatic perspective

scientific article published on 08 August 2020

Identification and molecular characterization of MYB Transcription Factor Superfamily in C4 model plant foxtail millet (Setaria italica L.).

scientific article

Identification of a microsatellite on chromosomes 6B and a STS on 7D of bread wheat showing an association with preharvest sprouting tolerance

Identification of eight chromosomes and a microsatellite marker on 1AS associated with QTL for grain weight in bread wheat

Identification, Characterization and Expression Profiling of Dicer-Like, Argonaute and RNA-Dependent RNA Polymerase Gene Families in Foxtail Millet

article

Identification, characterization, expression profiling, and virus-induced gene silencing of armadillo repeat-containing proteins in tomato suggest their involvement in tomato leaf curl New Delhi virus resistance

scientific article published on 17 December 2017

Insect herbivores benefit from horizontal gene transfer

scientific article published in 2021

Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering

scientific article

Involvement of host regulatory pathways during geminivirus infection: a novel platform for generating durable resistance

scientific article published on March 2014

Leaf crinkle disease in urdbean (Vigna mungo L. Hepper): An overview on causal agent, vector and host

scientific article

Mapped Ds/T-DNA launch pads for functional genomics in barley.

scientific article published on 02 August 2006

Millets for Next Generation Climate-Smart Agriculture

scientific article published on 18 July 2017

Millets: Genetic and Genomic Resources

Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv].

scientific article

NAC proteins: regulation and role in stress tolerance.

scientific article published on 21 March 2012

Plant innate immunity: an updated insight into defense mechanism.

scientific article published on June 2013

Population structure and association mapping of yield contributing agronomic traits in foxtail millet

Potential of underutilized crops to introduce the nutritional diversity and achieve zero hunger

scientific article published in 2022

RETRACTED ARTICLE: Abiotic stress-responsive expression of wali1 and wali5 genes from wheat ⬇️

scientific article published on August 23, 2012

Recent Advances in Plant–Virus Interaction with Emphasis on Small Interfering RNAs (siRNAs) ⬇️

scientific article published on September 1, 2013

Recent advances in tomato functional genomics: utilization of VIGS.

scientific article published on 06 June 2012

Reference genes for quantitative real-time PCR analysis in the model plant foxtail millet (Setaria italica L.) subjected to abiotic stress conditions

article

Salinity induced differential methylation patterns in contrasting cultivars of foxtail millet (Setaria italica L.).

scientific article published on 20 December 2016

Sequence-based novel genomic microsatellite markers for robust genotyping purposes in foxtail millet [Setaria italica (L.) P. Beauv].

scientific article

Silencing AC1 of Tomato leaf curl virus using artificial microRNA confers resistance to leaf curl disease in transgenic tomato

scientific article published on 29 August 2020

Structure, organization and evolution of ADP-ribosylation factors in rice and foxtail millet, and their expression in rice

scientific article published on 21 April 2016

Synergistic antiviral effects against SARS-CoV-2 by plant-based molecules

scientific article published on 19 June 2020

The DNA-binding activity of an AP2 protein is involved in transcriptional regulation of a stress-responsive gene, SiWD40, in foxtail millet

scientific article published on 4 July 2012

Tomato 26S Proteasome subunit RPT4a regulates ToLCNDV transcription and activates hypersensitive response in tomato.

scientific article published on June 2016

Tomato cultivar tolerant to Tomato leaf curl New Delhi virus infection induces virus-specific short interfering RNA accumulation and defence-associated host gene expression

scientific article

Transcript profiling identifies novel transcripts with unknown functions as primary response components to osmotic stress in wheat (Triticum aestivum L.)

article

Transcriptional Regulators of Nitrate Metabolism: Key Players in Improving Nitrogen Use in Crops

scientific article published on 05 October 2020

Transcriptome Analysis of Differentially Expressed Genes During Embryo Sac Development in Apomeiotic Non-Parthenogenetic Interspecific Hybrid of Pennisetum glaucum ⬇️

scientific article published on July 1, 2012

Unraveling 14-3-3 proteins in C4 panicoids with emphasis on model plant Setaria italica reveals phosphorylation-dependent subcellular localization of RS splicing factor

scientific article

Use of SAMPL for a study of DNA polymorphism, genetic diversity and possible gene tagging in bread wheat.

scientific article published in February 2002

Validation of an allele-specific marker associated with dehydration stress tolerance in a core set of foxtail millet accessions

Variability in Indian bread wheat (Triticum aestivum L.) varieties differing in nitrogen efficiency as assessed by microsatellite markers

scientific article published on 13 March 2010

cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.).

scientific article published on July 2008

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