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List of works by Rui M Branca

A Common Peptidolytic Mechanism for Targeting Peptide Degradation in Mitochondria and Chloroplasts

scientific article published on 25 November 2017

A Mitochondrial LYR Protein Is Required for Complex I Assembly

scientific article published on 10 October 2019

A flowchart to analyze protease activity in plant mitochondria.

scientific article published in January 2015

A multi-step peptidolytic cascade for amino acid recovery in chloroplasts.

scientific article published on 31 October 2016

Alterations in the membrane-associated proteome fraction of alveolar macrophages in sarcoidosis

scientific article published on 29 March 2016

Concentration-dependent front velocity of the autocatalytic hydrogenase reaction.

scientific article published on June 2009

De novo sequencing of a 21-kDa cytochrome c4 from Thiocapsa roseopersicina by nanoelectrospray ionization ion-trap and Fourier-transform ion-cyclotron resonance mass spectrometry.

scientific article published in December 2007

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.

scientific article published on 2 March 2018

Driving protein conformational changes with light: Photoinduced structural rearrangement in a heterobimetallic oxidase.

scientific article published on 22 December 2017

Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ).

scientific article

Ether cross-link formation in the R2-like ligand-binding oxidase

scientific article published on 26 June 2018

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

scientific article published on 17 November 2013

Identification of chromatophore membrane protein complexes formed under different nitrogen availability conditions in Rhodospirillum rubrum

scientific article published on 26 April 2011

In vitro oxidative inactivation of human presequence protease (hPreP).

scientific article published on 3 October 2012

Isoelectric point-based fractionation by HiRIEF coupled to LC-MS allows for in-depth quantitative analysis of the phosphoproteome

scientific article published on 3 July 2017

Mammalian target of rapamycin (mTor) mediates tau protein dyshomeostasis: implication for Alzheimer disease

scientific article

Mechanism of Peptide Binding and Cleavage by the Human Mitochondrial Peptidase Neurolysin.

scientific article published on 25 November 2017

Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics

scientific article

Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts

scientific article published on 16 September 2013

Oxygen and temperature-dependent structural and redox changes in a novel cytochrome c(4) from the purple sulfur photosynthetic bacterium Thiocapsa roseopersicina.

scientific article published on 29 August 2007

Phosphoproteomic profiling of NSCLC cells reveals that ephrin B3 regulates pro-survival signaling through Akt1-mediated phosphorylation of the EphA2 receptor.

scientific article published on 11 April 2011

Proteomic screen reveals Fbw7 as a modulator of the NF-κB pathway.

scientific article

Proteomic study of thyroid tumors reveals frequent up-regulation of the Ca2+ -binding protein S100A6 in papillary thyroid carcinoma

scientific article

Quantitative accuracy in mass spectrometry based proteomics of complex samples: the impact of labeling and precursor interference

scientific article published on 5 November 2013

Quantitative proteomics profiling of primary lung adenocarcinoma tumors reveals functional perturbations in tumor metabolism

scientific article published on 13 August 2013

Secretome protein signature of human gastrointestinal stromal tumor cells

scientific article published on 14 May 2015

SpliceVista, a tool for splice variant identification and visualization in shotgun proteomics data

scientific article

Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor

scientific article

Synaptic markers of cognitive decline in neurodegenerative diseases: a proteomic approach

scientific article published on 9 January 2018

Tartrate-resistant acid phosphatase (TRAP/ACP5) promotes metastasis-related properties via TGFβ2/TβR and CD44 in MDA-MB-231 breast cancer cells.

scientific article published on 15 September 2017

Theoretical calculations on hydrogenase kinetics: explanation of the lag phase and the enzyme concentration dependence of the activity of hydrogenase uptake.

scientific article published on 10 June 2005

Tumor proteomics by multivariate analysis on individual pathway data for characterization of vulvar cancer phenotypes

scientific article

microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network

scientific article published on August 2016