List of works - Aidong Zhang

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

scientific article

A "seed-refine" algorithm for detecting protein complexes from protein interaction data

scientific article

A Multi-Task Framework for Monitoring Health Conditions via Attention-based Recurrent Neural Networks.

scientific article

A Survey on Context Learning

scientific article from 2017

A Survey on Literature Based Discovery Approaches in Biomedical Domain

scientific article published on 09 March 2019

A Two-Step Approach for Clustering Proteins based on Protein Interaction Profile

scientific article published on January 2005

A graph-based integrative method of detecting consistent protein functional modules from multiple data sources

scientific article

A multi-context learning approach for EEG epileptic seizure detection

scholarly article by Ye Yuan published in November 2018

A network modeling approach for the spatial distribution and structure of bone mineral content

scientific article

A novel functional module detection algorithm for protein-protein interaction networks

scientific article published on 5 December 2006

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

scientific article

A topological measurement for weighted protein interaction network

scientific article published in January 2005

A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis

scientific article

ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks

scientific article published on January 2015

AMBIENCE: a novel approach and efficient algorithm for identifying informative genetic and environmental associations with complex phenotypes

scientific article

Analysis of pharmacokinetics, pharmacodynamics, and pharmacogenomics data sets using VizStruct, a novel multidimensional visualization technique

scientific article

BioStar models of clinical and genomic data for biomedical data warehouse design

scientific article

BoneNET: a network model of bone microstructure and dynamics

scientific article published in January 2013

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions

scientific article

Cluster analysis for gene expression data: a survey

scientific article published in November 2004

Clustering PPI data based on improved functional-flow model through quantum-behaved PSO.

scientific article

Clustering and overlapping modules detection in PPI network based on IBFO ⬇️

scientific article published on January 1, 2013

Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity ⬇️

scientific article published on September 3, 2010

Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks

scientific article published on 18 September 2015

Detecting epileptic seizures with electroencephalogram via a context-learning model

scientific article

Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis

scientific article

ESPD: a pattern detection model underlying gene expression profiles

scientific article published on 29 January 2004

Fourier harmonic approach for visualizing temporal patterns of gene expression data.

scientific article

Identification of dynamic protein complexes based on fruit fly optimization algorithm

article by Xiujuan Lei et al published August 2016 in Knowledge-Based Systems

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins

scientific article

Identifying informative risk factors and predicting bone disease progression via deep belief networks

scientific article published on 27 June 2014

Inferring Effective Connectivity Networks From fMRI Time Series With a Temporal Entropy-Score

scientific article published in 2022

Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits

scientific article

Information-theoretic identification of predictive SNPs and supervised visualization of genome-wide association studies

scientific article

Information-theoretic metrics for visualizing gene-environment interactions

scientific article

Learning for Counterfactual Fairness from Observational Data

scientific article published on 04 August 2023

MAE-FMD: multi-agent evolutionary method for functional module detection in protein-protein interaction networks

scientific article

MAML-en-LLM: Model Agnostic Meta-Training of LLMs for Improved In-Context Learning

scientific article published on 25 August 2024

MeSHProbeNet: a self-attentive probe net for MeSH indexing

scientific article published on 9 March 2019

Multi-agent modeling of the South Korean avian influenza epidemic

scientific article

On handling negative transfer and imbalanced distributions in multiple source transfer learning

scientific article published on 18 April 2014

On the Analysis of Diseases and Their Related Geographical Data

scientific article

Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets

scholarly article by Xiujuan Lei et al published July 2018 in Knowledge-Based Systems

Predicting protein function by frequent functional association pattern mining in protein interaction networks

scientific article published in September 2009

Prediction and Informative Risk Factor Selection of Bone Diseases

scientific article published on January 2015

Privacy-preserving Kruskal–Wallis test ⬇️

scientific article published on July 18, 2013

Protein complex detection with semi-supervised learning in protein interaction networks ⬇️

scientific article published on October 14, 2011

Scheduling Hyperparameters to Improve Generalization: From Centralized SGD to Asynchronous SGD

scientific article published on 22 June 2022

Secure Inter-Domain Forwarding Loop Test in Software Defined Networks

scientific article published in 2020

Semantic integration to identify overlapping functional modules in protein interaction networks

scientific article

Semantic similarity based feature extraction from microarray expression data

scientific article

The interaction index, a novel information-theoretic metric for prioritizing interacting genetic variations and environmental factors

scientific article

Towards Generalized mmWave-based Human Pose Estimation through Signal Augmentation

scientific article published on 30 September 2023

Towards Self-Learning Based Hypotheses Generation in Biomedical Text Domain

scientific article published on 26 December 2017

Tracking Temporal Community Strength in Dynamic Networks

scientific article published in November 2015

UVA School of Data Science Open Access Guidelines and Recommendations

administrative guideline

VizStruct for visualization of genome-wide SNP analyses

scientific article published on 13 April 2006

VizStruct: exploratory visualization for gene expression profiling

scientific article

List of works by Aidong Zhang

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

A "seed-refine" algorithm for detecting protein complexes from protein interaction data

A Multi-Task Framework for Monitoring Health Conditions via Attention-based Recurrent Neural Networks.

A Survey on Context Learning

A Survey on Literature Based Discovery Approaches in Biomedical Domain

A Two-Step Approach for Clustering Proteins based on Protein Interaction Profile

A graph-based integrative method of detecting consistent protein functional modules from multiple data sources

A multi-context learning approach for EEG epileptic seizure detection

A network modeling approach for the spatial distribution and structure of bone mineral content

A novel functional module detection algorithm for protein-protein interaction networks

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

A topological measurement for weighted protein interaction network

A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis

ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks

AMBIENCE: a novel approach and efficient algorithm for identifying informative genetic and environmental associations with complex phenotypes

Analysis of pharmacokinetics, pharmacodynamics, and pharmacogenomics data sets using VizStruct, a novel multidimensional visualization technique

BioStar models of clinical and genomic data for biomedical data warehouse design

BoneNET: a network model of bone microstructure and dynamics

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions

Cluster analysis for gene expression data: a survey

Clustering PPI data based on improved functional-flow model through quantum-behaved PSO.

Clustering and overlapping modules detection in PPI network based on IBFO ⬇️

Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity ⬇️

Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks

Detecting epileptic seizures with electroencephalogram via a context-learning model

Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis

ESPD: a pattern detection model underlying gene expression profiles

Fourier harmonic approach for visualizing temporal patterns of gene expression data.

Identification of dynamic protein complexes based on fruit fly optimization algorithm

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins

Identifying informative risk factors and predicting bone disease progression via deep belief networks

Inferring Effective Connectivity Networks From fMRI Time Series With a Temporal Entropy-Score

Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits

Information-theoretic identification of predictive SNPs and supervised visualization of genome-wide association studies

Information-theoretic metrics for visualizing gene-environment interactions

Learning for Counterfactual Fairness from Observational Data

MAE-FMD: multi-agent evolutionary method for functional module detection in protein-protein interaction networks

MAML-en-LLM: Model Agnostic Meta-Training of LLMs for Improved In-Context Learning

MeSHProbeNet: a self-attentive probe net for MeSH indexing

Multi-agent modeling of the South Korean avian influenza epidemic

On handling negative transfer and imbalanced distributions in multiple source transfer learning

On the Analysis of Diseases and Their Related Geographical Data

Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets

Predicting protein function by frequent functional association pattern mining in protein interaction networks

Prediction and Informative Risk Factor Selection of Bone Diseases

Privacy-preserving Kruskal–Wallis test ⬇️

Protein complex detection with semi-supervised learning in protein interaction networks ⬇️

Scheduling Hyperparameters to Improve Generalization: From Centralized SGD to Asynchronous SGD

Secure Inter-Domain Forwarding Loop Test in Software Defined Networks

Semantic integration to identify overlapping functional modules in protein interaction networks

Semantic similarity based feature extraction from microarray expression data

The interaction index, a novel information-theoretic metric for prioritizing interacting genetic variations and environmental factors

Towards Generalized mmWave-based Human Pose Estimation through Signal Augmentation

Towards Self-Learning Based Hypotheses Generation in Biomedical Text Domain

Tracking Temporal Community Strength in Dynamic Networks

UVA School of Data Science Open Access Guidelines and Recommendations

VizStruct for visualization of genome-wide SNP analyses

VizStruct: exploratory visualization for gene expression profiling