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List of works by Daniel Petras

A MassQL-Integrated Molecular Networking Approach for the Discovery and Substructure Annotation of Bioactive Cyclic Peptides

A Metabolic Choreography of Maize Plants Treated with a Humic Substance-Based Biostimulant under Normal and Starved Conditions

scientific article published in 2021

A community resource for paired genomic and metabolomic data mining

scientific article published in 2021

Applying Tissue Separation and Untargeted Metabolomics to Understanding Lipid Saturation Kinetics of Host Mitochondria and Symbiotic Algae in Corals Under High Temperature Stress

scientific article published in 2022

Aspergillus niger is a superior expression host for the production of bioactive fungal cyclodepsipeptides

scientific article published on 2 March 2018

Assessing Target Specificity of the Small Molecule Inhibitor MARIMASTAT to Snake Venom Toxins: A Novel Application of Thermal Proteome Profiling

scientific article published in 2024

Assessment of styrene‐divinylbenzene polymer (PPL) solid‐phase extraction and non‐targeted tandem mass spectrometry for the analysis of xenobiotics in seawater

scientific article published in 2021

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

scientific article published on 09 November 2020

Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon

scientific article published in 2022

Biochemical Dissection of the Natural Diversification of Microcystin Provides Lessons for Synthetic Biology of NRPS.

scientific article published in April 2016

Chemical Gradients of Plant Substrates in an <i>Atta texana</i> Fungus Garden

scientific article published on 03 August 2021

Chemical Proportionality within Molecular Networks

scientific article published in 2021

Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence

scientific article published on 01 July 2021

Combined venom profiling and cytotoxicity screening of the Radde's mountain viper (Montivipera raddei) and Mount Bulgar Viper (Montivipera bulgardaghica) with potent cytotoxicity against human A549 lung carcinoma cells.

scientific article

Comparative high-speed profiling of carboxylic acid metabolite levels by differential isotope-coded MALDI mass spectrometry

scientific article published in September 2009

Convergent evolution of defensive venom components in spitting cobras

scientific article published on 01 April 2020

Correction to: Aspergillus niger is a superior expression host for the production of bioactive fungal cyclodepsipeptides.

scientific article published on 27 March 2018

Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

scientific article published in 2020

Decoding the molecular interplay in the central dogma: An overview of mass spectrometry‐based methods to investigate protein‐metabolite interactions

scientific article published on 21 November 2023

Deuterium-Labeled Precursor Feeding Reveals a New pABA-Containing Meroterpenoid from the Mango Pathogen Xanthomonas citri pv. mangiferaeindicae.

scientific article published on 27 May 2016

Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals

scientific article published on 31 January 2022

Feature-based molecular networking in the GNPS analysis environment

scientific article published on 24 August 2020

From single cells to our planet-recent advances in using mass spectrometry for spatially resolved metabolomics

scientific article published on 10 January 2017

Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds

scientific article published on 12 November 2020

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

scientific article published on 03 December 2021

High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter

scientific article published in 2017

Intact protein mass spectrometry reveals intraspecies variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey

scientific article published on 11 February 2019

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

scientific article

Isotopic Insights into Organic Composition Differences between Supermicron and Submicron Sea Spray Aerosol

scientific article published on 28 June 2022

Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

scholarly article published 10 June 2019

Large scale top-down venomics - A bird's-eye view of genus wide venom composition

scientific article published on 01 April 2020

Leader Peptide-Free In Vitro Reconstitution of Microviridin Biosynthesis Enables Design of Synthetic Protease-Targeted Libraries

scientific article

Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter

scientific article published in 2022

Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites

scientific article

Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.

scientific article published on 12 October 2016

Mass spectrometry guided venom profiling and bioactivity screening of the Anatolian Meadow Viper, Vipera anatolica

scientific article published on 15 September 2015

Mass spectrometry searches using MASST

scientific article published on 01 January 2020

Meta-mass shift chemical profiling of metabolomes from coral reefs.

scientific article published on 12 October 2017

Metabolomics and Molecular Networking to Characterize the Chemical Space of Four Momordica Plant Species

scientific article published in 2021

Minimum Information about a Biosynthetic Gene cluster.

scientific article published on August 2015

Molecular Commerce on Coral Reefs: Using Metabolomics to Reveal Biochemical Exchanges Underlying Holobiont Biology and the Ecology of Coastal Ecosystems

scientific article published on 23 July 2021

Molecular insights into antibiotic resistance - how a binding protein traps albicidin

scientific article published in Nature Communications

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

scientific article published on 6 June 2021

Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles

scientific article published in 2020

Native mass spectrometry-based metabolomics identifies metal-binding compounds

scientific article published in 2021

Native metabolomics identifies the rivulariapeptolide family of protease inhibitors ⬇️

scientific article published in 2022

Natural products as mediators of disease.

scientific article

Non-target tandem mass spectrometry enables the prioritization of anthropogenic pollutants in seawater along the northern San Diego coast

Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater

scientific article

Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics

scientific article published in 2023

Protein-species quantitative venomics: looking through a crystal ball

scientific article

Publisher Correction: Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

correction of a scholarly article

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

ReDU: a framework to find and reanalyze public mass spectrometry data

scientific article published on 17 August 2020

Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS

scholarly article published 8 August 2019

Reproducible mass spectrometry data processing and compound annotation in MZmine 3

scientific article published on 20 May 2024

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

scientific article published on 13 May 2020

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut

scientific article published in 2021

Significance estimation for large scale metabolomics annotations by spectral matching

scientific article published on 14 November 2017

Snake venomics of African spitting cobras: toxin composition and assessment of congeneric cross-reactivity of the pan-African EchiTAb-Plus-ICP antivenom by antivenomics and neutralization approaches

scientific article published on 31 January 2011

Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals

scientific article published on 26 November 2019

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

scientific article published on 23 November 2020

The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal)

scientific article published in 2021

The O-Carbamoyl-Transferase Alb15 Is Responsible for the Modification of Albicidin

scientific article published on 17 February 2016

The Sea Spray Chemistry and Particle Evolution Study (SeaSCAPE): Overview and Experimental Methods

preprint

The Sea Spray Chemistry and Particle Evolution study (SeaSCAPE): overview and experimental methods

scholarly article published in 2022

The emerging field of venom-microbiomics for exploring venom as a microenvironment, and the corresponding Initiative for Venom Associated Microbes and Parasites (iVAMP)

scientific article published on 20 September 2019

The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization

article

The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine.

scientific article published on 19 January 2015

The medical threat of mamba envenoming in sub-Saharan Africa revealed by genus-wide analysis of venom composition, toxicity and antivenomics profiling of available antivenoms

scientific article published on 23 August 2017

Three-Dimensional Molecular Cartography of the Caribbean Reef-Building Coral Orbicella faveolata

scientific article published on 01 April 2021

Top-down venomics of the East African green mamba, Dendroaspis angusticeps, and the black mamba, Dendroaspis polylepis, highlight the complexity of their toxin arsenals.

scientific article published on 15 June 2016

Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking

scientific article published on 6 September 2017

Transcriptomics-guided bottom-up and top-down venomics of neonate and adult specimens of the arboreal rear-fanged Brown Treesnake, Boiga irregularis, from Guam

scientific article published on 29 December 2017

Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism. ⬇️

scientific article published on 23 January 2018

Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages

scientific article published on 15 June 2018

Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

scientific article published on 30 July 2019

Venom Proteomics of Indonesian King Cobra, Ophiophagus hannah: Integrating Top-Down and Bottom-Up Approaches

scientific article published on 27 April 2015

What makes Xanthomonas albilineans unique amongst xanthomonads?

scientific article

microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data ⬇️

scientific article published in 2024

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