List of works by Stephan Saalfeld

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster

article

A connectome and analysis of the adult Drosophila central brain

scientific article published on 03 September 2020

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

scientific article

An unbiased template of the Drosophila brain and ventral nerve cord

scientific article published on 31 December 2020

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

scientific article

Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set

scientific article published on 24 June 2021

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

BigDataViewer: visualization and processing for large image data sets

scientific article

Building bridges between cellular and molecular structural biology

scientific article

CATMAID: collaborative annotation toolkit for massive amounts of image data

scientific article

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

scientific article published on 01 January 2019

Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach

scientific article published on 22 December 2009

Elastic volume reconstruction from series of ultra-thin microscopy sections.

scientific article published on 10 June 2012

Fiji: an open-source platform for biological-image analysis

scientific article

Globally optimal stitching of tiled 3D microscopic image acquisitions

scientific article

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts

scientific article

Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy

scientific article

ImgLib2--generic image processing in Java

scientific article

Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction

scientific article published on 24 May 2018

OME-Zarr: a cloud-optimized bioimaging file format with international community support

scientific article published in 2023

Post-acquisition image based compensation for thickness variation in microscopy section series ⬇️

PreMosa: Extracting 2D surfaces from 3D microscopy mosaics

scientific article

Quantitative neuroanatomy for connectomics in Drosophila

scientific article published on 18 March 2016

Software for bead-based registration of selective plane illumination microscopy data

scientific article published in June 2010

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development

scientific article

The candidate multi-cut for cell segmentation

TrakEM2 software for neural circuit reconstruction

scientific article (publication date: 2012)

Whole-brain serial-section electron microscopy in larval zebrafish

scientific article

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