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List of works by Toshifumi Minamoto

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

article

A new method for random mutagenesis by error-prone polymerase chain reaction using heavy water

scientific article published on 24 September 2011

A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

scientific article published on 26 August 2015

A novel isoform of vertebrate ancient opsin in a smelt fish, Plecoglossus altivelis

scientific article published in January 2002

A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant

article

An emerging infectious pathogen endangers an ancient lineage of common carp by acting synergistically with conspecific exotic strains

An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols

scientific article published on 10 August 2020

Apis cerana japonica discriminates between floral color phases of the oriental orchid, Cymbidium floribundum

scientific article published in December 2010

Application of environmental DNA analysis for the detection of Opisthorchis viverrini DNA in water samples

scientific article published on 17 January 2017

Autumn dispersal and limited success of reproduction of the deepbody bitterling (<i>Acheilognathus longipinnis</i>) in terrestrialized floodplain

scientific article published in 2022

Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption

scientific article published on 25 October 2009

Comparison of Evolutionary Relationships between Branchiostoma floridae, Ciona intestinalis, and Homo sapiens Globins Provide Evidence of Gene Co-Option and Convergent Evolution

scientific article published on 6 November 2023

Compilation of real‐time <scp>PCR</scp> conditions toward the standardization of <scp>environmental DNA</scp> methods

scientific article published on 21 March 2021

Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses

scientific article published on 13 February 2021

Continuous prevalence of VEB‐3 extended‐spectrum β‐lactamase‐producing <i>Aeromonas hydrophila</i> in a local river in gifu city, Japan

scientific article published in February 2021

Correction: Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

scientific article published on 4 April 2016

Detection of Schistosoma japonicum and Oncomelania hupensis quadrasi environmental DNA and its potential utility to schistosomiasis japonica surveillance in the Philippines

scientific article published on 20 November 2019

Detection of cyprinid herpesvirus 3 DNA in river water during and after an outbreak.

scientific article

Detection of cyprinid herpesvirus-3 DNA in lake plankton

scientific article published on 9 August 2010

Detection of herbivory: eDNA detection from feeding marks on leaves

scientific article published in 2020

Detection of periodic patterns in microarray data reveals novel oscillating transcripts of biological rhythms in Ciona intestinalis

Development and evaluation of PCR primers for environmental DNA (eDNA) metabarcoding of Amphibia

scientific article

Development of environmental DNA detection assays for snakes in paddy fields in Japan

scientific article published in 2022

Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stress

scholarly article by Teruhiko Takahara et al published 9 January 2014 in Ichthyological Research

Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. ⬇️

scientific article published on 12 September 2017

Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species

scientific article published on 20 April 2015

Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution

scientific article published on 21 January 2019

Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3

article

Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio)

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs

scientific article published on 06 May 2020

Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples

Environmental DNA analysis for estimating the abundance and biomass of stream fish

article

Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population

scientific article published on 15 April 2020

Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

scientific article

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea.

scientific article

Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan

scientific article published on 25 April 2019

Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods

scientific article

Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami

scientific article published on 20 August 2021

Environmental DNA reflects spatial and temporal jellyfish distribution

scientific article

Environmental DNA revealed the fish community of Hokkaido Island, Japan, after invasion by rainbow trout ⬇️

scientific article published on 29 October 2020

Environment–KHV–carp–human linkage as a model for environmental diseases

scientific article published in 2011

Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modeling

scientific article published on 30 June 2020

Estimating the spawning activity of fish species using nuclear and mitochondrial environmental <scp>DNA</scp> concentrations and their ratios

scientific article published in 2022

Estimation of fish biomass using environmental DNA

scientific article (publication date: 2012)

Estimations of Riverine Distribution, Abundance, and Biomass of Anguillid Eels in Japan and Taiwan Using Environmental DNA Analysis

scientific article published on 09 June 2020

Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants

scientific article

Expression of spliced variants ofperiodmRNA in the Japanese honeybeeApis cerana japonica

article published in 2012

Identifying a breeding habitat of a critically endangered fish, Acheilognathus typus, in a natural river in Japan

scientific article

Isopropanol precipitation method for collecting fish environmental DNA

scholarly article by Hideyuki Doi et al published 19 January 2017 in Limnology and Oceanography: Methods

Messenger RNA typing of environmental RNA (eRNA): A case study on zebrafish tank water with perspectives for the future development of eRNA analysis on aquatic vertebrates

scientific article published in 2020

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

scientific article

Molecular cloning and characterization of rhodopsin in a teleost (Plecoglossus altivelis, Osmeridae).

scientific article published in April 2003

Molecular cloning of cone opsin genes and their expression in the retina of a smelt, Ayu (Plecoglossus altivelis, Teleostei).

scientific article published in February 2005

Molecular cloning of lysozyme-encoding cDNAs expressed in the salivary gland of a wood-feeding termite, Reticulitermes speratus

scientific article published on December 2002

Monitoring fish pathogenic viruses in natural lakes in Yunnan, China

article

Nationwide Cyprinid herpesvirus 3 contamination in natural rivers of Japan.

scientific article

Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio

scientific article published on 4 August 2016

On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation

article published in 2016

Projection range of eDNA analysis in marshes: a suggestion from the Siberian salamander (Salamandrella keyserlingii) inhabiting the Kushiro marsh, Japan

scientific article published on 20 August 2020

Quantification of cyprinid herpesvirus 3 in environmental water by using an external standard virus

scientific article

Random Mutagenesis by Error-Prone Polymerase Chain Reaction Using a Heavy Water Solvent

Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA.

scientific article

Reservoirs of Cyprinid herpesvirus 3 (CyHV-3) DNA in sediments of natural lakes and ponds.

scientific article

Seasonal distribution of cyprinid herpesvirus 3 in Lake Biwa, Japan

scientific article published on 4 September 2009

Seasonal reactivation enables Cyprinid herpesvirus 3 to persist in a wild host population

scientific article published on 21 November 2013

Sedimentary DNA tracks decadal-centennial changes in fish abundance

scientific article published on 08 October 2020

Sedimentary eDNA provides different information on timescale and fish species composition compared with aqueous eDNA

scientific article published on 21 February 2020

Spatial variation and temporal stability of littoral water temperature relative to lakeshore morphometry: environmental analysis from the view of fish thermal ecology

article

Spatial-temporal analysis of water temperatures during spring in Lake Erhai, China: implications for fisheries

article

Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis

scientific article published in April 2021

Species traits and ecosystem characteristics affect species detection by <scp>eDNA</scp> metabarcoding in lake fish communities

scientific article published in 2023

Stress response to daily temperature fluctuations in common carp, Cyprinus carpio L

article

Surveillance of fish species composition using environmental DNA

article

Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction

The release rate of environmental DNA from juvenile and adult fish

scientific article

The use of environmental DNA of fishes as an efficient method of determining habitat connectivity

scientific article published in 2016

Transmission dynamics of an emerging infectious disease in wildlife through host reproductive cycles

scientific article

Universal performance of benzalkonium chloride for the preservation of environmental <scp>DNA</scp> in seawater samples

scientific article published on 30 September 2021

Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA.

scientific article

Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys

scientific article

Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds

article

Using environmental DNA to estimate the distribution of an invasive fish species in ponds ⬇️

scientific article

Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance.

scientific article

eDNA‐based detection of a vulnerable crocodile newt (Tylototriton uyenoi) to influence government policy and raise public awareness

scientific article published on 3 February 2021

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