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List of works by Chongzhi Zang

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

scientific article

Abstract PR06: CRISPR screens identified drivers of endocrine resistance and synthetic lethal vulnerabilities in breast cancer

Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cells

scientific article

An integrative ENCODE resource for cancer genomics

scientific article published on 29 July 2020

BART Cancer: a web resource for transcriptional regulators in cancer genomes

scientific article published on 22 March 2021

BART: a transcription factor prediction tool with query gene sets or epigenomic profiles

scientific article published on 28 March 2018

BART: a transcription factor prediction tool with query gene sets or epigenomic profiles

article

Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

scientific article published on 15 September 2020

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

scientific article

Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation

scientific article published on January 2009

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer

scientific article published in November 2017

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

scientific article

Combinatorial patterns of histone acetylations and methylations in the human genome

scientific article

Discovery of biomarkers predictive of GSI response in triple-negative breast cancer and adenoid cystic carcinoma

scientific article

Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation

scientific article

Ectopic Tcf1 expression instills a stem-like program in exhausted CD8+ T cells to enhance viral and tumor immunity

scientific article published on 27 April 2020

Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells

scientific article published on 11 June 2009

Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.

scientific article published on 2 May 2017

Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

scientific article

Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells

scientific article

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

scientific article

High-dimensional genomic data bias correction and data integration using MANCIE

scientific article

Integrative Analysis Reveals the Transcriptional Collaboration between EZH2 and E2F1 in the Regulation of Cancer-Related Gene Expression

scientific article published on 9 December 2015

Integrative data analysis predicts YY1 as a Cis-regulator in the 3D Cell Culture Models of MCF10A at the Stiffness Level of High Mammographic Density

article

Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia

scientific article

MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes

scientific article

Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.

scientific article published on 27 July 2016

NF-E2, FLI1 and RUNX1 collaborate at areas of dynamic chromatin to activate transcription in mature mouse megakaryocytes

scientific article

NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers

scientific article

Network analysis of gene essentiality in functional genomics experiments

scientific article

Nickel exposure induces persistent mesenchymal phenotype in human lung epithelial cells through epigenetic activation of ZEB1.

scientific article published on 12 March 2018

PTIP promotes chromatin changes critical for immunoglobulin class switch recombination

scientific journal article

Partitioning heritability by functional annotation using genome-wide association summary statistics

scientific article

Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases

scientific article

Single-cell chromatin profiling of the primitive gut tube reveals regulatory dynamics underlying lineage fate decisions

scientific article published on 26 May 2022

Target analysis by integration of transcriptome and ChIP-seq data with BETA.

scientific article

The role of Notch receptors in transcriptional regulation

scientific article published on May 2015

Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis

scientific article

Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions

scientific article published on 8 November 2017

YY1 is a cis-regulator in the organoid models of high mammographic density

scientific article published on 01 March 2020

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