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List of works by Fredrik Levander

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients

article

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.

scientific article published on 21 March 2016

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

scientific article published in December 2004

An adaptive alignment algorithm for quality-controlled label-free LC-MS.

scientific article

An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations

scientific article published on 30 January 2020

An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants

scientific article published on 31 August 2023

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths

scientific article published on 13 November 2017

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

scientific article published on 09 August 2016

Automated methods for improved protein identification by peptide mass fingerprinting

scientific article published in September 2004

Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments

scientific article published in January 2005

Automated quality control system for LC-SRM setups

scientific article

Automated reporting from gel-based proteomics experiments using the open source Proteios database application

scientific article published in March 2007

Automated selected reaction monitoring software for accurate label-free protein quantification

scientific article

BEX1 acts as a tumor suppressor in acute myeloid leukemia.

scientific article published on 26 May 2015

Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis

scientific article published in February 2006

Comparative Membrane-Associated Proteomics of Three Different Immune Reactions in Potato.

scientific article published on 10 February 2018

Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae

scientific article published on 19 January 2015

Critical comparison of multidimensional separation methods for increasing protein expression coverage

scientific article

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

scientific article

Data on haplotype-supported immunoglobulin germline gene inference

scientific article

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis

scientific article

Data processing methods and quality control strategies for label-free LC-MS protein quantification

scientific article

Development of Reagents for Differential Protein Quantitation by Subtractive Parent (Precursor) Ion Scanning

scientific article published on 08 February 2007

Differential proteomic analysis of HT29 Cl.16E and intestinal epithelial cells by LC ESI/QTOF mass spectrometry

scientific article

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

scientific article published on 25 May 2016

Enhanced exopolysaccharide production by metabolic engineering of Streptococcus thermophilus

scientific article

Exopolysaccharide-producing strains of thermophilic lactic acid bacteria cluster into groups according to their EPS structure.

scientific article published in June 2001

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

scientific article published on 3 May 2011

Generic workflow for quality assessment of quantitative label-free LC-MS analysis

scientific article

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

scientific article

Human Proteinpedia enables sharing of human protein data

scientific article

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis

scientific article published on 23 February 2011

Improved label-free LC-MS analysis by wavelet-based noise rejection

scientific article published on 28 January 2010

Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance

scientific article published on 14 February 2020

Is label-free LC-MS/MS ready for biomarker discovery?

scientific article published on 21 March 2015

Laboratory Data and Sample Management for Proteomics ⬇️

scientific article published on January 1, 2011

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

scientific article

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

scientific article published on 5 August 2004

Multimodel pathway enrichment methods for functional evaluation of expression regulation

scientific article

NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

scientific article

Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets

scientific article

NormalyzerDE: Online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis

scientific article published on 15 October 2018

Numerical compression schemes for proteomics mass spectrometry data

scientific article

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

scientific article published on 04 March 2021

Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

scientific article published on 04 April 2017

Paranoid potato: phytophthora-resistant genotype shows constitutively activated defense

scientific article

Patient-Derived Xenograft Models Reveal Intratumor Heterogeneity and Temporal Stability in Neuroblastoma

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

scientific article

Physiological role of beta-phosphoglucomutase in Lactococcus lactis

scientific article

Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.

scientific article

Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum

scientific article published on 14 June 2013

Proteomic analysis of Phytophthora infestans reveals the importance of cell wall proteins in pathogenicity.

scientific article published on 21 September 2017

Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

article

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

scientific article published in April 2008

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

article

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

scientific article

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

scientific article

Quantification of membrane proteins using nonspecific protease digestions

scientific article published in December 2009

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

scientific article published on 17 March 2014

Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

scientific article

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons

scientific article published on 18 November 2011

Representation of selected-reaction monitoring data in the mzQuantML data standard

scientific article published on 5 June 2015

Requirement for phosphoglucomutase in exopolysaccharide biosynthesis in glucose- and lactose-utilizing Streptococcus thermophilus

scientific article

Small-scale analysis of exopolysaccharides from Streptococcus thermophilus grown in a semi-defined medium

scientific article

Starch-hydrolyzing bacteria from Ethiopian soda lakes.

scientific article published in April 2001

Targeted Proteomics Approach for Precision Plant Breeding

scientific article published on 25 December 2015

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

scientific article (publication date: 2013)

The protein expression of Streptococcus pyogenes is significantly influenced by human plasma

scientific article published in November 2005

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

scientific article

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

scientific article published on 22 July 2019

TraML--a standard format for exchange of selected reaction monitoring transition lists

scientific article published on 12 December 2011

Trehalose-6-phosphate phosphorylase is part of a novel metabolic pathway for trehalose utilization in Lactococcus lactis.

scientific article

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

scientific article published in December 2023

Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry

scientific article published on 30 May 2008

mzML--a community standard for mass spectrometry data

2011 scientific article

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