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List of works by Ewy Mathé

A Review of Pulmonary Toxicity of Electronic Cigarettes in the Context of Smoking: A Focus on Inflammation.

scientific article

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

scientific article published on 05 November 2020

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

scientific article

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data

scientific article published in August 2017

An Integrated Prognostic Classifier for Stage I Lung Adenocarcinoma Based on mRNA, microRNA, and DNA Methylation Biomarkers

scientific article published in July 2015

An OpenData portal to share COVID-19 drug repurposing data in real time

scientific article published on 05 June 2020

Association of inflammation-related and microRNA gene expression with cancer-specific mortality of colon adenocarcinoma

scientific article published on 08 September 2009

B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity

scientific article

BRD4 profiling identifies critical Chronic Lymphocytic Leukemia oncogenic circuits and reveals sensitivity to PLX51107, a novel structurally distinct BET inhibitor

scientific article published on 31 January 2018

Biomarkers of Exposure and Effect in the Lungs of Smokers, Nonsmokers, and Electronic Cigarette Users

scientific article published on 17 December 2019

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

scientific article published on 20 December 2019

Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181) ⬇️

proceedings

Computational approaches for predicting the biological effect of p53 missense mutations: a comparison of three sequence analysis based methods

scientific article

Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases

scientific article published on 16 April 2020

Correction to: The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): conference summary and innovations in genomics

scientific article published on 06 May 2020

Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions

scientific article published on 28 April 2020

DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes

scientific article

Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial

scientific article published on 16 October 2019

Electronic Cigarettes and the Lung Proteome

scientific article published on 01 November 2018

Electronic versus Combustible Cigarette Effects on Inflammasome Component Release into Human Lung

scientific article published on 01 April 2019

Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics

scientific article published on 29 August 2020

Experimental and Study Design Considerations for Uncovering Oncometabolites

scientific article published in January 2017

Identification of transcription factor co-regulators that drive prostate cancer progression

scientific article published on 23 November 2020

Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database

scientific article (publication date: June 2007)

Inflammation regulates microRNA expression in cooperation with p53 and nitric oxide

scientific article published in November 2011

Inflammatory and microRNA gene expression as prognostic classifier of Barrett's-associated esophageal adenocarcinoma

scientific article

Innovating Computational Biology and Intelligent Medicine: ICIBM 2019 Special Issue

scientific article published on 17 April 2020

IntLIM: integration using linear models of metabolomics and gene expression data

scientific article published on 5 March 2018

Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective

scientific article published on 18 June 2019

Integration of Metabolomics and Transcriptomics to Identify Gene-Metabolite Relationships Specific to Phenotype

scientific article published on 01 January 2019

Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.

scientific article published on December 2013

MDM2-Dependent Rewiring of Metabolomic and Lipidomic Profiles in Dedifferentiated Liposarcoma Models

scientific article published on 04 August 2020

MYC-driven accumulation of 2-hydroxyglutarate is associated with breast cancer prognosis.

scientific article published on 09 December 2013

Matchmaking in Bioinformatics

scientific article published on 9 February 2018

Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS)

scientific article published on 17 July 2019

MiR-21 is an EGFR-regulated anti-apoptotic factor in lung cancer in never-smokers

scientific article published on 13 July 2009

MicroRNA expression in squamous cell carcinoma and adenocarcinoma of the esophagus: associations with survival

scientific article

Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein

scientific article published on 18 August 2009

Multi-omics: Traversing the Central Dogma of Molecular Biology

scientific article published on 01 August 2020

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation

scientific article published on 28 July 2017

NCATS Inxight Drugs: a comprehensive and curated portal for translational research

scientific article published on 14 October 2021

Network analyses in microbiome based on high-throughput multi-omics data

scientific article published on 11 February 2020

Nitric oxide is a key component in inflammation-accelerated tumorigenesis

scientific article

Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer.

scientific article

Precision information extraction for rare disease epidemiology at scale

scientific article published on 28 February 2023

Predicting the transactivation activity of p53 missense mutants using a four-body potential score derived from Delaunay tessellations

scientific article

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes

scientific article published on 14 November 2022

RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

scientific article published on 22 February 2018

Recent advances in mass spectrometry-based computational metabolomics

Scientific evidence based rare disease research discovery with research funding data in knowledge graph

scientific article published on 18 November 2021

TCRD and Pharos 2021: mining the human proteome for disease biology

scientific article published on 06 November 2020

The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies

scientific article published on 01 June 2019

The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases

scientific article published on 20 December 2019

The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): computational methods and applications in medical genomics

scientific article published on 03 April 2020

The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): conference summary and innovations in genomics

scientific article published on 30 December 2019

The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions

scientific article published on 18 March 2020

The Omics Revolution Continues: The Maturation of High-Throughput Biological Data Sources

scientific article published on 29 August 2018

The association of microRNA expression with prognosis and progression in early-stage, non-small cell lung adenocarcinoma: a retrospective analysis of three cohorts.

scientific article

The metaRbolomics Toolbox in Bioconductor and beyond

scientific article published on 23 September 2019

Urinary Metabolite Risk Biomarkers of Lung Cancer: A Prospective Cohort Study

scientific article published on 24 March 2016

Wikidata: empowering metabolomics research ⬇️

scientific abstract from May 2022

microRNA and inflammatory gene expression as prognostic marker for overall survival in esophageal squamous cell carcinoma

scientific article published on 17 December 2012

p53 isoforms Delta133p53 and p53beta are endogenous regulators of replicative cellular senescence

scientific article

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