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List of works by Shy Shoham

A Hydrogel-Based Nerve Regeneration Conduit with Sub-Micrometer Feature Control

A genetically encoded near-infrared fluorescent calcium ion indicator

Acousto-Optical Deflector-Based Patterned Ultraviolet Uncaging of Neurotransmitter for the Study of Neuronal Integration

scientific article published on 01 August 2012

Advanced optoacoustic methods for multiscale imaging of in vivo dynamics

scientific article published on 9 March 2017

All-optical bidirectional neural interfacing using hybrid multiphoton holographic optogenetic stimulation

scientific article

Cell-Type-Selective Effects of Intramembrane Cavitation as a Unifying Theoretical Framework for Ultrasonic Neuromodulation.

scientific article

Cellular Resolution Panretinal Imaging of Optogenetic Probes Using a Simple Funduscope

scientific article published on 18 September 2012

Coding of position by simultaneously recorded sensory neurones in the cat dorsal root ganglion

scientific article published on 26 August 2004

Cognitive-motor brain-machine interfaces

scientific article

Computational de-scattering for enabling high rate deep imaging of neural activity traces: Simulation study

Construction, alignment, and implementation of an acousto-optical deflector-based system for patterned uncaging with ultraviolet light

scientific article

Correction-free remotely scanned two-photon mouse retinal imaging

Correlation-based analysis and generation of multiple spike trains using hawkes models with an exogenous input

scientific article

Correlation-based approach to analysis of spiking networks.

scientific article

Correlation-distortion based identification of Linear-Nonlinear-Poisson models.

scientific article published on 15 September 2009

Correspondence: Revisiting the theoretical cell membrane thermal capacitance response.

scientific article published on 10 November 2017

Design and characteristics of holographic neural photo-stimulation systems

scientific article published on 16 October 2009

Discrete stimulus estimation from neural responses in the turtle retina

scientific article published on 26 January 2006

Effects of the murine skull in optoacoustic brain microscopy.

scientific article published on 27 April 2015

Estimation of the skull insertion loss using an optoacoustic point source

Fast scanning coaxial optoacoustic microscopy

scientific article

Form-function relations in cone-tipped stimulating microelectrodes

scientific article published on 05 August 2009

Functional optoacoustic neuro-tomography for scalable whole-brain monitoring of calcium indicators

scientific article published on 02 December 2016

Functional optoacoustic neuro-tomography of calcium fluxes in adult zebrafish brain in vivo

scientific article published in March 2017

Generation of spike trains with controlled auto- and cross-correlation functions

scientific article

Holographic fiber bundle system for patterned optogenetic activation of large-scale neuronal networks.

scientific article

Holographic optogenetic stimulation of patterned neuronal activity for vision restoration

scientific article

Holographic photo-stimulation for dynamic control of neuronal population activity

Holographically patterned activation using photo-absorber induced neural-thermal stimulation

scientific article

How silent is the brain: is there a "dark matter" problem in neuroscience?

scientific article

Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks

scientific article

Identification of network-level coding units for real-time representation of episodic experiences in the hippocampus

scientific article

Induced neuro-vascular interactions robustly enhance functional attributes of engineered neural implants

scientific article published on 04 July 2018

Intramembrane Cavitation as a Predictive Bio-Piezoelectric Mechanism for Ultrasonic Brain Stimulation

Intramembrane cavitation as a unifying mechanism for ultrasound-induced bioeffects

scientific article

Introduction to the optics and the brain 2015 feature issue

scientific article published on 20 November 2015

Laser photoablation of guidance microchannels into hydrogels directs cell growth in three dimensions

scientific article

Line temporal focusing characteristics in transparent and scattering media

scientific article

Microfluidic Chip for Site-Specific Neuropharmacological Treatment and Activity Probing of 3D Neuronal "Optonet" Cultures

scientific article

Microscopic PSF estimation and resolution enhancement by speckle pattern illumination

article published in 2016

Motor-cortical activity in tetraplegics.

scientific article

Multimodal optoacoustic and multiphoton fluorescence microscopy

Multiphoton Optical Approaches to Understanding Brain Function

Multivariate autoregressive modeling and granger causality analysis of multiple spike trains

scientific article published on 29 April 2010

Neural substrates of tactile object recognition: an fMRI study.

scientific article published in April 2004

New insights and system designs for temporally focused multiphoton optogenetics

New methods for simulation and analysis of correlated spike-trains

Non-invasive in vivo functional optoacoustic calcium imaging of neural activity in GCaMP6f-expressing mice

Numerical evaluation of temporal focusing characteristics in transparent and scattering media

scientific article published on 01 March 2011

Numerical evaluation of temporal focusing characteristics in transparent and scattering media: erratum

scholarly article published in Optics Express

Optics on the Brain: OSA’s Mulitphoton and Patterned Optogenetics Incubator

article published in 2014

Optogenetics meets optical wavefront shaping ⬇️

scientific article published on September 29, 2010

Patterned optical activation of Channelrhodopsin II expressing retinal ganglion cells

Patterned optical activation of retinal ganglion cells

scientific article

Phase-controlled, speckle-free holographic projection with applications in precision optogenetics

Photonic Interfacing with Large Scale Natural and Bioengineered Neuronal Networks

Photonic interfacing with natural and bioengineered large-scale neuronal networks

Point spread function estimation from projected speckle illumination

Preparing, Handling, and Applying Caged Compound Solutions for Acousto-Optical Deflector-Based Patterned Uncaging with Ultraviolet Light

scientific article published on 01 August 2012

Publisher Correction: Rapid volumetric optoacoustic imaging of neural dynamics across the mouse brain

scientific article published on 02 November 2020

Rapid neurotransmitter uncaging in spatially defined patterns

scientific article

Rapid volumetric optoacoustic imaging of neural dynamics across the mouse brain

scientific article published on 25 March 2019

Rapid volumetric temporal focusing multiphoton microscopy of neural activity: theory, image processing, and experimental realization

Realistic Modeling of Optogenetic Neuronal Excitation in Light-Scattering Brain Tissue

Realistic Numerical and Analytical Modeling of Light Scattering in Brain Tissue for Optogenetic Applications(1,2,3).

scientific article published on January 2016

Reduction of two-photon holographic speckle using shift-averaging

scientific article published in December 2011

Remotely scanned multiphoton temporal focusing by axial grism scanning

scientific article published on 01 July 2012

Robust clustering by deterministic agglomeration EM of mixtures of multivariate t-distributions

scholarly article by Shy Shoham published May 2002 in Pattern Recognition

Robust, automatic spike sorting using mixtures of multivariate t-distributions

scientific article published in August 2003

Simulation of morphologically structured photo-thermal neural stimulation

scientific article published on 18 August 2017

Sparse decoding of multiple spike trains for brain-machine interfaces

scientific article published on 6 September 2012

Sparsity-based single-shot sub-wavelength coherent diffractive imaging

Sparsity-based single-shot subwavelength coherent diffractive imaging

scientific article

Spatially and Temporally Precise Optical Probing of Neural Activity Readout

Special issue on optical neural engineering: advances in optical stimulation technology

scientific article published on 19 July 2010

Special section guest editorial: optical imaging, sensing, and light interactions in cells and tissues.

scientific article published in November 2013

Speckle elimination using shift-averaging in high-rate holographic projection

scientific article published on 01 February 2009

Spontaneous Activity Characteristics of 3D "Optonets".

scientific article

Statistical encoding model for a primary motor cortical brain-machine interface

scientific article published in July 2005

Structured neuronal encoding and decoding of human speech features

scientific article

Subspace projection approaches to classification and visualization of neural network-level encoding patterns

scientific article

Superlinear population encoding of dynamic hand trajectory in primary motor cortex.

scientific article published in September 2004

Thermal Transients Excite Neurons through Universal Intramembrane Mechanoelectrical Effects

Thermal transients excite neurons through universal intramembrane mechano-electrical effects

Three-dimensional guidance of DRG neurite outgrowth using multi-photon photo-ablation

Towards multifocal ultrasonic neural stimulation II: design considerations for an acoustic retinal prosthesis

scientific article

Towards multifocal ultrasonic neural stimulation: pattern generation algorithms

scientific article published on 18 August 2010

Two Photon Holographic Stimulation System for Cellular-Resolution Interrogation of Olfactory Coding

Two-photonin vivoimaging of retinal microstructures

Ultra-deep penetration of temporally-focused two-photon excitation

Ultrasonic neuromodulation

scientific article published on 6 May 2016

Utah optrode array customization using stereotactic brain atlases and 3-D CAD modeling for optogenetic neocortical interrogation in small rodents and nonhuman primates

scientific article published on 12 July 2017

Volumetric optoacoustic imaging of large-scale calcium activity in adult zebrafish brain in vivo

article published in 2017

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