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List of works by Lucian Smith

A reappraisal of how to build modular, reusable models of biological systems.

scientific article

Apoglobin Stability Is the Major Factor Governing both Cell-free and in Vivo Expression of Holomyoglobin

scientific article published on 23 July 2015

CNValidator: validating somatic copy-number inference

scientific article published on 01 August 2019

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

SBML and CellML translation in antimony and JSim.

scientific article

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). ⬇️

scientific article published on 19 March 2018

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

scientific article

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

scientific article published on 04 August 2020

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

scientific article published on 06 July 2020

Tellurium Notebooks - An Environment for Dynamical Model Development, Reproducibility, and Reuse

article

Tellurium notebooks-An environment for reproducible dynamical modeling in systems biology.

scientific article published on 15 June 2018

Tellurium: An extensible python-based modeling environment for systems and synthetic biology

scientific article published on 25 July 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

scientific article published on 20 June 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

scientific article published on 9 March 2018

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

scientific article published on 29 June 2020

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4

scientific article published in 2021

The simulation experiment description markup language (SED-ML): language specification for level 1 version 5

scientific article published in March 2024

libRoadRunner 2.0: a high performance SBML simulation and analysis library

scientific article published in 2022

phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.

scientific article

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