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List of works by Virag Sharma

A genomics approach reveals insights into the importance of gene losses for mammalian adaptations

scientific article published on 23 March 2018

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment

scientific article

Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli

scientific article

CD4 T cell activation, function, and metabolism are inhibited by low concentrations of DMSO

scientific article published on 07 September 2018

CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation.

scientific article published on 26 August 2017

Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene Annotation

scientific article published on 01 January 2019

Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation

scientific article published on 25 March 2016

CodonLogo: a sequence logo-based viewer for codon patterns.

scientific article published on 17 May 2012

Convergent gene losses illuminate metabolic and physiological changes in herbivores and carnivores

scientific article published on 04 February 2019

Genes lost during the transition from land to water in cetaceans highlight genomic changes associated with aquatic adaptations

scientific article published on 25 September 2019

Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.

scientific article published on 21 June 2017

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish

scientific article

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals.

scientific article published on 28 June 2018

Loss of enzymes in the bile acid synthesis pathway explains differences in bile composition among mammals

scientific article published in December 2018

Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators

scientific article published on 6 April 2015

Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome

scientific article published on 20 March 2019

Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8 Gene in Mammals.

scientific article

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