List of works - Arnau Cordomí

A methyl group at C7 of 11-cis-retinal allows chromophore formation but affects rhodopsin activation

scientific article published on 06 October 2006

Alterations in the photoactivation pathway of rhodopsin mutants associated with retinitis pigmentosa

scientific article published on 15 March 2011

Analysis of the interactions of sulfur-containing amino acids in membrane proteins

scientific article published on 30 May 2016

Beyond spectral tuning: human cone visual pigments adopt different transient conformations for chromophore regeneration

scientific article published on 19 September 2015

Binding specificity of retinal analogs to photoactivated visual pigments suggest mechanism for fine-tuning GPCR-ligand interactions

scientific article published on 20 February 2014

Chemical probes for the recognition of cannabinoid receptors in native systems

scientific article

Cognitive Impairment Induced by Delta9-tetrahydrocannabinol Occurs through Heteromers between Cannabinoid CB1 and Serotonin 5-HT2A Receptors

scientific article

Critical Role of Electrostatic Interactions of Amino Acids at the Cytoplasmic Region of Helices 3 and 6 in Rhodopsin Conformational Properties and Activation

scientific article published in Journal of Biological Chemistry

Design of a True Bivalent Ligand with Picomolar Binding Affinity for a G Protein-Coupled Receptor Homodimer

scholarly article by Daniel Pulido et al published 26 September 2018 in Journal of Medicinal Chemistry

Differential light-induced responses in sectorial inherited retinal degeneration.

scientific article

Distinct CCK-2 receptor conformations associated with β-arrestin-2 recruitment or phospholipase-C activation revealed by a biased antagonist

scientific article published on 6 February 2013

Distinct conformational states of the CCK2R are associated with β-arrestin-2 recruitment or phospholipase-C activation

Effect of Force Field Parameters on Sodium and Potassium Ion Binding to Dipalmitoyl Phosphatidylcholine Bilayers

scientific article published on August 2009

Effect of different treatments of long-range interactions and sampling conditions in molecular dynamic simulations of rhodopsin embedded in a dipalmitoyl phosphatidylcholine bilayer

scientific article published on 01 April 2007

Effect of ions on a dipalmitoyl phosphatidylcholine bilayer. a molecular dynamics simulation study

scientific article

Evidence for functional pre-coupled complexes of receptor heteromers and adenylyl cyclase.

scientific article published on 28 March 2018

Functional elements of the gastric inhibitory polypeptide receptor: Comparison between secretin- and rhodopsin-like G protein-coupled receptors

scientific article published on June 2015

GIP receptor: Expression in neuroendocrine tumours, internalization, signalling from endosomes and structure-function relationship studies

scientific article published on 16 December 2019

GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences

scientific article published in PLoS ONE

GPCRmd uncovers the dynamics of the 3D-GPCRome

scientific article published on 13 July 2020

Gastrin-stimulated Gα13 Activation of Rgnef Protein (ArhGEF28) in DLD-1 Colon Carcinoma Cells.

scientific article published on 28 April 2015

Gut hormone GPCRs: structure, function, drug discovery

scientific article

Hydrophobic amino acids at the cytoplasmic ends of helices 3 and 6 of rhodopsin conjointly modulate transducin activation

scientific article published on 27 November 2010

Impact of helix irregularities on sequence alignment and homology modeling of G protein-coupled receptors

scientific article published on July 2012

Interactions between intracellular domains as key determinants of the quaternary structure and function of receptor heteromers

scientific article

Interactions of fatty acids with phosphatidylethanolamine membranes: X-ray diffraction and molecular dynamics studies

scientific article

Ligand binding determinants for angiotensin II type 1 receptor from computer simulations

scientific article

Ligand-Triggered Structural Changes in the M2 Muscarinic Acetylcholine Receptor

scientific article published on 02 May 2018

Membrane Protein Simulations Using AMBER Force Field and Berger Lipid Parameters

Modeling of G protein-coupled receptors using crystal structures: from monomers to signaling complexes

scientific article published on January 2014

Molecular Switches of Allosteric Modulation of the Metabotropic Glutamate 2 Receptor

scientific article

Molecular dynamics simulations of rhodopsin in different one-component lipid bilayers.

scientific article

Molecular dynamics simulations of rhodopsin point mutants at the cytoplasmic side of helices 3 and 6.

scientific article

Molecular mechanisms of disease for mutations at Gly-90 in rhodopsin

scientific article published on 22 September 2011

Molecular modeling of the M3 acetylcholine muscarinic receptor and its binding site

scientific article published on 27 February 2012

Publisher Correction: GPCRmd uncovers the dynamics of the 3D-GPCRome

scientific article published on 23 July 2020

Quaternary structure of a G-protein-coupled receptor heterotetramer in complex with Gi and Gs.

scientific article

Structural Rearrangements of Rhodopsin Subunits in a Dimer Complex: a Molecular Dynamics Simulation Study

article

Structural characterization of a zinc high-affinity binding site in rhodopsin.

scientific article published on 11 February 2009

Structural-functional analysis of the third transmembrane domain of the corticotropin-releasing factor type 1 receptor: role in activation and allosteric antagonism

scientific article

Structures for G-Protein-Coupled Receptor Tetramers in Complex with G Proteins

scientific article published in October 2015

Study of the conformational profile of the norbornane analogues of phenylalanine

scientific article published in June 2002

Sulfur-containing amino acids in 7TMRs: molecular gears for pharmacology and function

scientific article published on 21 April 2013

TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins

scientific article

The G-protein coupled receptor family: actors with many faces

scientific article published on January 2012

The role of Cysteine 6.47 in class A GPCRs

scientific article

The role of hydrophobic amino acids in the structure and function of the rhodopsin family of G protein-coupled receptors

scientific article published on January 2013

X-ray absorption and molecular dynamics study of cation binding sites in the purple membrane.

scientific article published in May 2007

List of works by Arnau Cordomí

A methyl group at C7 of 11-cis-retinal allows chromophore formation but affects rhodopsin activation

Alterations in the photoactivation pathway of rhodopsin mutants associated with retinitis pigmentosa

Analysis of the interactions of sulfur-containing amino acids in membrane proteins

Beyond spectral tuning: human cone visual pigments adopt different transient conformations for chromophore regeneration

Binding specificity of retinal analogs to photoactivated visual pigments suggest mechanism for fine-tuning GPCR-ligand interactions

Chemical probes for the recognition of cannabinoid receptors in native systems

Cognitive Impairment Induced by Delta9-tetrahydrocannabinol Occurs through Heteromers between Cannabinoid CB1 and Serotonin 5-HT2A Receptors

Critical Role of Electrostatic Interactions of Amino Acids at the Cytoplasmic Region of Helices 3 and 6 in Rhodopsin Conformational Properties and Activation

Design of a True Bivalent Ligand with Picomolar Binding Affinity for a G Protein-Coupled Receptor Homodimer

Differential light-induced responses in sectorial inherited retinal degeneration.

Distinct CCK-2 receptor conformations associated with β-arrestin-2 recruitment or phospholipase-C activation revealed by a biased antagonist

Distinct conformational states of the CCK2R are associated with β-arrestin-2 recruitment or phospholipase-C activation

Effect of Force Field Parameters on Sodium and Potassium Ion Binding to Dipalmitoyl Phosphatidylcholine Bilayers

Effect of different treatments of long-range interactions and sampling conditions in molecular dynamic simulations of rhodopsin embedded in a dipalmitoyl phosphatidylcholine bilayer

Effect of ions on a dipalmitoyl phosphatidylcholine bilayer. a molecular dynamics simulation study

Evidence for functional pre-coupled complexes of receptor heteromers and adenylyl cyclase.

Functional elements of the gastric inhibitory polypeptide receptor: Comparison between secretin- and rhodopsin-like G protein-coupled receptors

GIP receptor: Expression in neuroendocrine tumours, internalization, signalling from endosomes and structure-function relationship studies

GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences

GPCRmd uncovers the dynamics of the 3D-GPCRome

Gastrin-stimulated Gα13 Activation of Rgnef Protein (ArhGEF28) in DLD-1 Colon Carcinoma Cells.

Gut hormone GPCRs: structure, function, drug discovery

Hydrophobic amino acids at the cytoplasmic ends of helices 3 and 6 of rhodopsin conjointly modulate transducin activation

Impact of helix irregularities on sequence alignment and homology modeling of G protein-coupled receptors

Interactions between intracellular domains as key determinants of the quaternary structure and function of receptor heteromers

Interactions of fatty acids with phosphatidylethanolamine membranes: X-ray diffraction and molecular dynamics studies

Ligand binding determinants for angiotensin II type 1 receptor from computer simulations

Ligand-Triggered Structural Changes in the M2 Muscarinic Acetylcholine Receptor

Membrane Protein Simulations Using AMBER Force Field and Berger Lipid Parameters

Modeling of G protein-coupled receptors using crystal structures: from monomers to signaling complexes

Molecular Switches of Allosteric Modulation of the Metabotropic Glutamate 2 Receptor

Molecular dynamics simulations of rhodopsin in different one-component lipid bilayers.

Molecular dynamics simulations of rhodopsin point mutants at the cytoplasmic side of helices 3 and 6.

Molecular mechanisms of disease for mutations at Gly-90 in rhodopsin

Molecular modeling of the M3 acetylcholine muscarinic receptor and its binding site

Publisher Correction: GPCRmd uncovers the dynamics of the 3D-GPCRome

Quaternary structure of a G-protein-coupled receptor heterotetramer in complex with Gi and Gs.

Structural Rearrangements of Rhodopsin Subunits in a Dimer Complex: a Molecular Dynamics Simulation Study

Structural characterization of a zinc high-affinity binding site in rhodopsin.

Structural-functional analysis of the third transmembrane domain of the corticotropin-releasing factor type 1 receptor: role in activation and allosteric antagonism

Structures for G-Protein-Coupled Receptor Tetramers in Complex with G Proteins

Study of the conformational profile of the norbornane analogues of phenylalanine

Sulfur-containing amino acids in 7TMRs: molecular gears for pharmacology and function

TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins

The G-protein coupled receptor family: actors with many faces

The role of Cysteine 6.47 in class A GPCRs

The role of hydrophobic amino acids in the structure and function of the rhodopsin family of G protein-coupled receptors

X-ray absorption and molecular dynamics study of cation binding sites in the purple membrane.