List of works - Ronnie Alves

A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes

article

A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining

scientific article published on 12 February 2019

A visual-analytics system for railway safety management

scientific article published on 25 July 2014

Advances in Bioinformatics and Computational Biology: 11th Brazilian Symposium on Bioinformatics, BSB 2018, Niterói, Brazil, October 30 – November 1, 2018, Proceedings

11th Brazilian Symposium on Bioinformatics, BSB 2018, Niterói, Brazil, October 30 – November 1, 2018, Proceedings

BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases

scholarly article by Daniel Lichtnow published in January 2014

Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil

scientific article published on 12 March 2019

Biomarkers, Ranking

Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration

scientific article published on 17 May 2020

Detecting Abnormal Patterns in Call Graphs Based on the Aggregation of Relevant Vertex Measures

Differential accumulation of proteins in oil palms affected by fatal yellowing disease.

scientific article published on 5 April 2018

Establishing Fraud Detection Patterns Based on Signatures

FUNN-MG: A Metagenomic Systems Biology Computational Framework

Frequent Pattern Mining

article

Gene Association Analysis, Frequent-Pattern Mining

article

Gene Expression Biomarkers, Ranking

article

Gene association analysis: a survey of frequent pattern mining from gene expression data

scientific article

Induced genome maintenance pathways in pre-cancer tissues describe an anti-cancer barrier in tumor development

scientific article published in November 2012

Influence of water quality on diversity and composition of fungal communities in a tropical river

scientific article published in Scientific Reports

Landscape Genomic Conservation Assessment of a Narrow-Endemic and a Widespread Morning Glory From Amazonian Savannas.

scientific article

Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change

scientific article published on 10 April 2019

Late Quaternary hydroclimate and vegetation changes in an upland lake in southeastern Amazonia

scientific article published in 2023

Machine learning meets genome assembly

scholarly article by Kleber Padovani de Souza et al published 17 August 2018 in Briefings in Bioinformatics

Mining Top-K Multidimensional Gradients

Modern pollen rain as a background for palaeoenvironmental studies in the Serra dos Carajás, southeastern Amazonia

New chimeric RNAs in acute myeloid leukemia

scientific article published on 2 August 2017

On the Computation of Maximal-Correlated Cuboids Cells

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.

scientific article published on 2 November 2016

On the utilization of deep and ensemble learning to detect milk adulteration

scientific article published on 08 July 2019

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly

scientific article published on 08 August 2018

Palynology of the Middle Miocene—Pliocene Novo Remanso Formation, Central Amazonia, Brazil

article

Pollen morphology of the Poaceae: implications of the palynological and paleoecological records of the southeastern Amazon in Brazil

article

Programming Relational Databases for Itemset Mining over Large Transactional Tables

article by Ronnie Alves & Orlando Belo published 2005 in Lecture Notes in Computer Science

Quillworts from the Amazon: A multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae

scientific article published in PLoS ONE

RFMirTarget: A Random Forest Classifier for Human miRNA Target Gene Prediction

article

RFMirTarget: Predicting Human MicroRNA Target Genes with a Random Forest Classifier ⬇️

scientific article published on July 26, 2013

Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.

scientific article published on 7 March 2016

Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction

article

VCloud

geneRFinder: gene finding in distinct metagenomic data complexities

scientific article published on 25 February 2021

List of works by Ronnie Alves

A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes

A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining

A visual-analytics system for railway safety management

Advances in Bioinformatics and Computational Biology: 11th Brazilian Symposium on Bioinformatics, BSB 2018, Niterói, Brazil, October 30 – November 1, 2018, Proceedings

BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases

Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil

Biomarkers, Ranking

Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration

Detecting Abnormal Patterns in Call Graphs Based on the Aggregation of Relevant Vertex Measures

Differential accumulation of proteins in oil palms affected by fatal yellowing disease.

Establishing Fraud Detection Patterns Based on Signatures

FUNN-MG: A Metagenomic Systems Biology Computational Framework

Frequent Pattern Mining

Gene Association Analysis, Frequent-Pattern Mining

Gene Expression Biomarkers, Ranking

Gene association analysis: a survey of frequent pattern mining from gene expression data

Induced genome maintenance pathways in pre-cancer tissues describe an anti-cancer barrier in tumor development

Influence of water quality on diversity and composition of fungal communities in a tropical river

Landscape Genomic Conservation Assessment of a Narrow-Endemic and a Widespread Morning Glory From Amazonian Savannas.

Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change

Late Quaternary hydroclimate and vegetation changes in an upland lake in southeastern Amazonia

Machine learning meets genome assembly

Mining Top-K Multidimensional Gradients

Modern pollen rain as a background for palaeoenvironmental studies in the Serra dos Carajás, southeastern Amazonia

New chimeric RNAs in acute myeloid leukemia

On the Computation of Maximal-Correlated Cuboids Cells

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.

On the utilization of deep and ensemble learning to detect milk adulteration

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly

Palynology of the Middle Miocene—Pliocene Novo Remanso Formation, Central Amazonia, Brazil

Pollen morphology of the Poaceae: implications of the palynological and paleoecological records of the southeastern Amazon in Brazil

Programming Relational Databases for Itemset Mining over Large Transactional Tables

Quillworts from the Amazon: A multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae

RFMirTarget: A Random Forest Classifier for Human miRNA Target Gene Prediction

RFMirTarget: Predicting Human MicroRNA Target Genes with a Random Forest Classifier ⬇️

Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.

Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction

VCloud

geneRFinder: gene finding in distinct metagenomic data complexities