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List of works by Daniel Croll

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

scientific article published on 11 February 2020

A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch.

scientific article published on 25 April 2018

A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements.

scientific article published on 24 January 2017

A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

scientific article published in 2021

A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization

scientific article published on 23 June 2020

A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene

scientific article published on 6 February 2017

Acetate provokes mitochondrial stress and cell death in Ustilago maydis.

scientific article published on 13 December 2017

Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation

scientific article

Analysis of the nasal vestibule mycobiome in patients with allergic rhinitis.

scientific article published on 10 February 2015

Arbuscular Mycorrhiza: The Challenge to Understand the Genetics of the Fungal Partner ⬇️

scientific article published on January 1, 2010

Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen.

scientific article

Can Evolution Supply What Ecology Demands?

scientific article

Chloroplast-associated metabolic functions influence the susceptibility of maize to Ustilago maydis.

scientific article

Chromosomal assembly and analyses of genome-wide recombination rates in the forest pathogenic fungus Armillaria ostoyae

scientific article published on 13 March 2020

Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population

scientific article published in January 2022

Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specialization

scientific article published on 6 April 2018

Comparative Transcriptome Analyses in Zymoseptoria tritici Reveal Significant Differences in Gene Expression Among Strains During Plant Infection.

scientific article published on 25 January 2017

Comparative transcriptomic analyses of Zymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles

scientific article

Complex Evolutionary Origins of Specialized Metabolite Gene Cluster Diversity among the Plant Pathogenic Fungi of the Fusarium graminearum Species Complex

scientific article published on 01 November 2019

Distinct Trajectories of Massive Recent Gene Gains and Losses in Populations of a Microbial Eukaryotic Pathogen

scientific article

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe

scientific article published on 05 March 2021

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

scientific article

Erratum for Attarian et al., "The Monothiol Glutaredoxin Grx4 Regulates Iron Homeostasis and Virulence in Cryptococcus neoformans"

scientific article published on 30 April 2019

Evolution in the absence of sex: Ideas revisited in the post-genomics age (retrospective on DOI 10.1002/bies.201300155)

scientific article published on 19 September 2016

Genome-Wide Detection of Genes Under Positive Selection in Worldwide Populations of the Barley Scald Pathogen.

scientific article published on 2 May 2018

Genome-wide evidence for divergent selection between populations of a major agricultural pathogen.

scientific article

Genomewide signatures of selection in Epichloë reveal candidate genes for host specialization

scientific article published on 6 April 2018

High-density genetic mapping identifies the genetic basis of a natural colony morphology mutant in the root rot pathogen Armillaria ostoyae.

scientific article

Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution

scientific article

Hitchhiking selection is driving intron gain in a pathogenic fungus.

scientific article published on 7 April 2014

Intron gains and losses in the evolution of Fusarium and Cryptococcus fungi

scientific article (publication date: 2012)

Learn from the fungi: adaptive evolution without sex in fungal pathogens (comment on DOI 10.1002/bies.201300155)

scientific article published on 01 April 2014

Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen

scientific article published on 10 June 2021

Maize susceptibility to Ustilago maydis is influenced by genetic and chemical perturbation of carbohydrate allocation

scientific article published on 26 August 2016

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments

scientific article published on 15 January 2021

Meiosis Leads to Pervasive Copy-Number Variation and Distorted Inheritance of Accessory Chromosomes of the Wheat Pathogen Zymoseptoria tritici.

scientific article

Multilocus resistance evolution to azole fungicides in fungal plant pathogen populations.

scientific article published on 14 November 2016

Nature's genetic screens: using genome-wide association studies for effector discovery

scientific article

Organic acids and glucose prime late-stage fungal biotrophy in maize

scientific article published in 2022

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

scientific article

Population genomics analyses of European ibex species show lower diversity and higher inbreeding in reintroduced populations.

scientific article published on 27 October 2017

Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex

scientific article published on 21 February 2020

QTL mapping of fungicide sensitivity reveals novel genes and pleiotropy with melanization in the pathogen Zymoseptoria tritici

scientific article published on 13 May 2015

QTL mapping of temperature sensitivity reveals candidate genes for thermal adaptation and growth morphology in the plant pathogenic fungus Zymoseptoria tritici

scientific article

Quantitative trait locus mapping of melanization in the plant pathogenic fungus Zymoseptoria tritici.

scientific article

Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici

scientific article published on 21 November 2016

Rapid Parallel Evolution of Azole Fungicide Resistance in Australian Populations of the Wheat Pathogen Zymoseptoria tritici

scientific article published on 06 February 2019

Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A

scientific article published on 9 October 2015

Soil composition and plant genotype determine benzoxazinoid‐mediated plant–soil feedbacks in cereals

scientific article published in 2021

Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen

scientific article published on 01 January 2020

Strong reproductive isolation and narrow genomic tracts of differentiation among three woodpecker species in secondary contact.

scientific article

Temporal changes in pathogen diversity in a perennial plant–pathogen–hyperparasite system

scientific article published on 05 February 2022

The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat

scientific article

The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens

scientific article published on 16 May 2018

The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen

scientific article published on 21 September 2015

The MoT3 assay does not distinguish between Magnaporthe oryzae wheat and rice blast isolates from Bangladesh

The Monothiol Glutaredoxin Grx4 Regulates Iron Homeostasis and Virulence in Cryptococcus neoformans

scientific article published on 04 December 2018

The birth and death of effectors in rapidly evolving filamentous pathogen genomes

scientific article published on 15 February 2018

The complex genomic basis of rapid convergent adaptation to pesticides across continents in a fungal plant pathogen

scientific article published on 19 November 2020

The emergence of the multi-species NIP1 effector in Rhynchosporium was accompanied by high rates of gene duplications and losses

scientific article published on 11 April 2019

The genetic basis of local adaptation for pathogenic fungi in agricultural ecosystems.

scientific article

The putative phospholipase Lip2 counteracts oxidative damage and influences the virulence of Ustilago maydis

scientific article

Transcriptome plasticity underlying plant root colonization and insect invasion by Pseudomonas protegens

scientific article published on 02 September 2020

Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat.

scientific article published on 16 July 2018

Unraveling coevolutionary dynamics using ecological genomics

scientific article published in 2022

Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution

scientific article

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat

scientific article published on 06 January 2022

What the population genetic structures of host and pathogen tell us about disease evolution

scientific article

Wheat Blast: Past, Present, and Future

scientific article published on 05 July 2018

Wheat blast: from its origins in South America to its emergence as a global threat

scientific article published on 24 October 2018

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