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List of works by David J Pagliarini

A Gly-zipper motif mediates homodimerization of the transmembrane domain of the mitochondrial kinase ADCK3.

scientific article

A PTEN-like phosphatase with a novel substrate specificity

scientific journal article

A Single Kinase Generates the Majority of the Secreted Phosphoproteome

scientific article

A mitochondrial protein compendium elucidates complex I disease biology

scientific article

A path to the powerhouse: Systems-to-structure approaches for studying mitochondrial proteins

scientific article published on 20 April 2018

A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis

scientific article

Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation

scientific article published on 23 July 2013

An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis

scientific article published on 17 January 2019

Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry.

scientific article published in March 2012

Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration

scientific article published on 01 October 2020

Automated gas-phase purification for accurate, multiplexed quantification on a stand-alone ion-trap mass spectrometer

scientific article published on 24 October 2012

Biochemistry of Mitochondrial Coenzyme Q Biosynthesis

scientific article published on 16 September 2017

Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome

scientific article published on 29 November 2012

Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity

scientific article

Classification of T-cell activation via autofluorescence lifetime imaging

scientific article published on 27 July 2020

Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER-mitochondria contacts

scientific article published on 23 January 2019

Complementary RNA and protein profiling identifies iron as a key regulator of mitochondrial biogenesis

scientific article published on 10 January 2013

Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family.

scientific article published on 24 November 2017

Dual specificity phosphatases 18 and 21 target to opposing sides of the mitochondrial inner membrane

scientific journal article

Erythropoietin signaling regulates heme biosynthesis

scientific article

Genetic Regulation of Plasma Lipid Species and Their Association with Metabolic Phenotypes

scientific article published on 13 June 2018

Hallmarks of a new era in mitochondrial biochemistry

scientific article published on December 2013

Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy

scientific article published on 18 September 2018

Inhibitors of bacterial tubulin target bacterial membranes in vivo

scientific article

Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase

scientific article published on 24 May 2017

Intelligent data acquisition blends targeted and discovery methods

scientific article

Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic beta cells.

scientific article

Iron Deprivation Induces Transcriptional Regulation of Mitochondrial Biogenesis

scientific article

Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy

scientific article published on 02 February 2020

Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation

scientific article

Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis

scientific article

Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis

scientific article

Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans

scientific article

Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function

scientific journal article

Mitochondrial modulation: reversible phosphorylation takes center stage?

scientific article

Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.

scientific article published on 26 September 2016

Mitochondrial protein hyperacetylation in the failing heart

scientific article published on 25 February 2016

Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

scientific article published on 22 February 2021

Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

scientific article published in December 2017

Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis

scientific article published on 12 December 2017

Multiplexed quantification for data-independent acquisition

scientific article

Mutation of C20orf7 disrupts complex I assembly and causes lethal neonatal mitochondrial disease

scientific article

Neutron-encoded mass signatures for multiplexed proteome quantification

scientific article published on 24 February 2013

Neutron-encoded mass signatures for quantitative top-down proteomics

scientific article published on 19 February 2014

Obesity-dependent CDK1 signaling stimulates mitochondrial respiration at complex I in pancreatic β-cells

scientific article published on 30 January 2019

Pharmacological targeting of the mitochondrial phosphatase PTPMT1.

scientific article

Post-Transcriptional Control of Coenzyme Q Biosynthesis Revealed by Transomic Analysis of the RNA-Binding Protein Puf3p

Pptc7 is an essential phosphatase for promoting mammalian mitochondrial metabolism and biogenesis

scientific article published on 19 July 2019

Protein Tyrosine Phosphatases

Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function.

scientific article published on January 2017

Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation

scientific article published on 17 July 2013

Quantitative shotgun proteome analysis by direct infusion

scientific article published on 23 November 2020

Solution NMR Structure of Yeast Succinate Dehydrogenase Flavinylation Factor Sdh5 Reveals a Putative Sdh1 Binding Site

scientific article

Systems Analyses Reveal Physiological Roles and Genetic Regulators of Liver Lipid Species.

scientific article

Transomics: Mitochondrial Systems Analyses Get Supercomplex

scientific article

UbiB proteins regulate cellular CoQ distribution in Saccharomyces cerevisiae

scientific article published on 06 August 2021

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

scientific article

Utilizing dynamically regulated phosphorylation as a means to modulate mitochondrial metabolism

scholarly article by Natalie M. Niemi & David J Pagliarini published November 2013 in Mitochondrion

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