List of works by Kazuharu Arakawa

A web server for interactive and zoomable Chaos Game Representation images

scientific article

AMPK activity is required for the induction of anhydrobiosis in a tardigrade Hypsibius exemplaris, and its potential up-regulator is PP2A

scientific article published on 06 November 2019

An integrative description of Macrobiotus shonaicus sp. nov. (Tardigrada: Macrobiotidae) from Japan with notes on its phylogenetic position within the hufelandi group.

scientific article published on 28 February 2018

Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation

scientific article published in 2013

Analysis of repetitive amino acid motifs reveals the essential features of spider dragline silk proteins.

scientific article

Base editors for simultaneous introduction of C-to-T and A-to-G mutations

scientific article published on 01 June 2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino' across the Japanese archipelago

scientific article published on 19 February 2018

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus.

scientific article published on 27 July 2017

Comparative study of circadian oscillatory network models of Drosophila.

scientific article published in January 2008

Comparison of the transcriptomes of two tardigrades with different hatching coordination

scientific article published on 09 December 2019

Complete Genome Sequence of Bacillus sp. Strain KH172YL63, Isolated from Deep-Sea Sediment

scientific article published on 16 April 2020

Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

scientific article published on 28 May 2020

Complete Genome Sequence of Halomonas hydrothermalis Strain Slthf2, a Halophilic Bacterium Isolated from a Deep-Sea Hydrothermal-Vent Environment

scientific article published on 09 April 2020

Complete Genome Sequence of Halomonas meridiana Strain Eplume2, Isolated from a Hydrothermal Plume in the Northeast Pacific Ocean

scientific article published on 14 May 2020

Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent

scientific article published on 16 April 2020

Complete Genome Sequence of Halomonas olivaria, a Moderately Halophilic Bacterium Isolated from Olive Processing Effluents, Obtained by Nanopore Sequencing

scientific article published on 02 May 2019

Complete Genome Sequence of Halomonas sulfidaeris Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing

scientific article published on 06 June 2019

Complete Genome Sequence of Halophilic Deep-Sea Bacterium Halomonas axialensis Strain Althf1

scientific article published on 01 August 2019

Complete Genome Sequence of sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan

scientific article published on 18 April 2019

Complete Genome Sequences of Two Cutibacterium acnes Strains Isolated from an Orthopedic Surgical Site

scientific article published on 23 April 2020

Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk

scientific article published in 2021

Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes

scientific article

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

scientific article

Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly.

scientific article published on 12 November 2015

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

scientific article

G-language genome analysis environment with REST and SOAP web service interfaces

scientific article published on 03 May 2010

GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes

scientific article

GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses

scientific article published on 29 August 2013

GPAC: benchmarking the sensitivity of genome informatics analysis to genome annotation completeness

scientific article published on 01 January 2006

Genome Projector: zoomable genome map with multiple views

scientific article

Genome sequencing of a single tardigrade Hypsibius dujardini individual

scientific article

Glucan synthase-like 2 is indispensable for paramylon synthesis in Euglena gracilis

scientific article published on 19 April 2017

In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs

scientific article published on 16 March 2007

KBWS: an EMBOSS associated package for accessing bioinformatics web services

scientific article published on 29 April 2011

MEGU: pathway mapping web-service based on KEGG and SVG

scientific article published on 01 October 2006

Measures of compositional strand bias related to replication machinery and its applications

scientific article published on March 2012

Merging multiple omics datasets in silico: statistical analyses and data interpretation

scientific article

Metabolic flux analysis and visualization.

scientific article published in August 2011

Molecular palaeontology illuminates the evolution of ecdysozoan vision.

scientific article published on 5 December 2018

Multiple high-throughput analyses monitor the response of E. coli to perturbations

scientific article

Nanopore sequencing: Review of potential applications in functional genomics

scientific article published on 29 April 2019

New Tardigrade Opsins and Differential Expression Analyses Show Ontogenic Variation in Light Perception

scientific article published in 2021

No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade

scientific article

Noise-reduction filtering for accurate detection of replication termini in bacterial genomes

scholarly article by Kazuharu Arakawa published in December 2006

Novel mitochondria-targeted heat-soluble proteins identified in the anhydrobiotic Tardigrade improve osmotic tolerance of human cells

scientific article

On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli.

scientific article

Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue

scientific article published on 10 June 2019

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API

scientific article

Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii

scientific article published on 11 September 2019

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

scientific article

Pre-treatment with D942, a furancarboxylic acid derivative, increases desiccation tolerance in an anhydrobiotic tardigrade Hypsibius exemplaris

scientific article published on 04 July 2020

Publisher Correction: Base editors for simultaneous introduction of C-to-T and A-to-G mutations

scientific article published on 05 June 2020

Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index

scientific article

Quantitative assay for TALEN activity at endogenous genomic loci

scientific article

Rearing and observation of immature stages of the hoverfly Microdon katsurai (Diptera, Syrphidae)

scientific article (publication date: 2016)

Restauro-G: a rapid genome re-annotation system for comparative genomics.

scientific article published on February 2007

Selection effects on the positioning of genes and gene structures from the interplay of replication and transcription in bacterial genomes.

scientific article published on 9 October 2007

Simultaneous Metabarcoding of Eukaryotes and Prokaryotes to Elucidate the Community Structures within Tardigrade Microhabitats

scientific article published in 2020

Spider silk self-assembly via modular liquid-liquid phase separation and nanofibrillation

scientific article published on 04 November 2020

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection.

scientific article published on 6 September 2007

The Unique Antimicrobial Recognition and Signaling Pathways in Tardigrades with a Comparison Across Ecdysozoa

scientific article published on 05 March 2020

The bagworm genome reveals a unique fibroin gene that provides high tensile strength

article

The complete mitochondrial genome of Echiniscus testudo (Heterotardigrada: Echiniscidae)

The complete mitochondrial genome of Eumeta variegata (Lepidoptera: Psychidae)

article by Kazuharu Arakawa et al published 3 July 2018 in Mitochondrial DNA. Part B, Resources

Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades

scientific article published on 28 May 2022

Transcriptomic data during development of a two-spotted cricket <i>Gryllus bimaculatus</i>

publication published on 20 September 2021

Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade

scientific article

Undesigned Selection for Replication Termination of Bacterial Chromosomes

scientific article published on 16 June 2014

Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli.

scientific article published on 12 January 2007

Validation of bacterial replication termination models using simulation of genomic mutations

scientific article

eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria.

scientific article published on 13 October 2017

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